Re: [OMPI users] Topology functions from MPI 1.1

2008-01-28 Thread Jeff Squyres
It depends on what you are trying to do. Is your network physically wired such that there is no direct link between nodes 1 and 2? (i.e., node 1 cannot directly send to node 2, such as via opening a socket from node 1 to node 2's IP address) MPI topology communicators do not prohibit on p

Re: [OMPI users] SCALAPACK: Segmentation Fault (11) and Signal code: Address not mapped (1)

2008-01-28 Thread Jeff Squyres
Sorry for not replying earlier. I'm not a SCALAPACK expert, but a common mistake I've seen users make is to use the mpif.h from a different MPI implementation when compiling their fortran programs. Can you verify that you're getting the Open MPI mpif.h? Also, there is a known problem tha

Re: [OMPI users] Information about multi-path on IB-based systems

2008-01-28 Thread Jeff Squyres
On Jan 23, 2008, at 3:12 PM, David Gunter wrote: Do I need to do anything special to enable multi-path routing on InfiniBand networks? For example, are there command-line arguments to mpiexec or the like? It depends on what you mean by multi-path routing. For each MPI peer pair (e.g., pro

[OMPI users] MPI-IO problems

2008-01-28 Thread R C
Hi, I compiled a molecular dynamics program DLPOLY3.09 on an AMD64 cluster running openmpi 1.2.4 with Portland group compilers.The program seems to run alright, however, each processor outputs: ADIOI_GEN_DELETE (line 22): **io No such file or directory It was suggested that it was an issue with

Re: [OMPI users] (no subject)

2008-01-28 Thread Josh Hursey
I'm unable to reproduce this problem. :( I tried both the svn head (r17288) and the tarball that you were using (openmpi-1.3a1r17175) on a similar system without problem. The error you are seeing may be caused by old connectivity information in the session directory. You may want to make su