[OMPI users] Re :Re: OpenMP and OpenMPI Issue

2007-11-01 Thread Neeraj Chourasia
Thanks for your reply,    but the program is running on TCP interconnect with same datasize and also on IB with small datasize say 1MB. So i dont think problem is in OpenMPI, it has to do something with IB logic, which probably doesnt work well with threads.I also tried the program with MPI_THR

Re: [OMPI users] How to construct a datatype over two different arrays?

2007-11-01 Thread Amit Kumar Saha
On 11/1/07, Oleg Morajko wrote: > > I'm not sure if you understood my question. The case is not trivial at all > or I miss something important. > Try to design this derived datatype and you will understand my point. Sorry :-( I blearily went through your query and just wondered if you might hav

Re: [OMPI users] Re :Re: OpenMP and OpenMPI Issue

2007-11-01 Thread Jeff Squyres
On Oct 31, 2007, at 9:52 PM, Neeraj Chourasia wrote: but the program is running on TCP interconnect with same datasize and also on IB with small datasize say 1MB. So i dont think problem is in OpenMPI, it has to do something with IB logic, which probably doesnt work well with threads.

Re: [OMPI users] How to construct a datatype over two different arrays?

2007-11-01 Thread Jeff Squyres
On Oct 31, 2007, at 5:52 PM, Oleg Morajko wrote: Let me clarify the context of the problem. I'm implementing a MPI piggyback mechanism that should allow for attaching extra data to any MPI message. The idea is to wrap MPI communication calls with PMPI interface (or with dynamic instrumentat

Re: [OMPI users] How to construct a datatype over two different arrays?

2007-11-01 Thread Oleg Morajko
Thank you Jeff for your opinion. It was really helpful. Concerning reduce operation in case of small messages: it is possible to wrap also a reduction operator and make it work with wrapped data. This operator could reduce only the original data and simply collect the piggybacked data (instead of

Re: [OMPI users] Too many open files Error

2007-11-01 Thread Bruno Coutinho
This page has information on how to increase the limit of open files. Pass 1 and 3 don't require reboot. http://www.cs.uwaterloo.ca/~brecht/servers/openfiles.html 2007/10/31, George Bosilca : > > For some version of Open MPI (recent versions) you can use the > btl_tcp_disable_family MCA paramete

Re: [OMPI users] Too many open files Error

2007-11-01 Thread Adrian Knoth
On Wed, Oct 31, 2007 at 06:55:47PM -0400, Tim Prins wrote: Hi! > I seem to recall (though this may have changed) that if a system supports > ipv6, we may open both ipv4 and ipv6 sockets. This can be worked around by > configuring Open MPI with --disable-ipv6 IPv6 is only an issue when talking

[OMPI users] Slightly OT: mpi job terminates

2007-11-01 Thread Karsten Bolding
This is not OpenMPI specific - but maybe somebody on the list can give a hint. I start a parallel job with: mpirun -np 19 -nolocal -machinefile machinefile bin/getm_prod_IFORT.0096x0096 everything starts OK and the simulation carries on 2+ hours of wall clock time - then suddenly without a trace

Re: [OMPI users] mpirun udapl problem

2007-11-01 Thread Jon Mason
On Wed, Oct 31, 2007 at 06:45:10PM -0400, Tim Prins wrote: > Hi Jon, > > Just to make sure, running 'ompi_info' shows that you have the udapl btl > installed? Yes, I get the following: # ompi_info | grep dapl MCA btl: udapl (MCA v1.0, API v1.0, Component v1.2.5) If I do not inc

Re: [OMPI users] mpirun udapl problem

2007-11-01 Thread George Bosilca
There are two things that are reflected in your email. 1. You can run Open MPI (or at least ompi_info) on the head node, and udapl is in the list of BTL. This means the head node has all libraries required to load udapl, and your LD_LIBRARY_PATH is correctly configured on the head node. 2