Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-17 Thread Jingchao Zhang
s on behalf of Novosielski, Ryan Sent: Thursday, December 17, 2015 7:04 PM To: Open MPI Users Subject: Re: [OMPI users] performance issue with OpenMPI 1.10.1 I'm no expert, but this one is pretty obvious. The error message says exactly what you should change: Equivalent MCA param

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-17 Thread Novosielski, Ryan
__ From: users [users-boun...@open-mpi.org] On Behalf Of Jingchao Zhang [zh...@unl.edu] Sent: Thursday, December 17, 2015 8:01 PM To: Open MPI Users Subject: Re: [OMPI users] performance issue with OpenMPI 1.10.1 The "mpirun --hetero-nodes -bind-to core -map-by core" resolves the perfo

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-17 Thread Ralph Castain
recated forms *will* disappear in a future version of Open MPI. > Please update to the new syntax. > -- > > Did I miss something in the "openmpi-mca-params.conf" file? > > Thanks, > > Dr. Jing

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-17 Thread Jingchao Zhang
of Nebraska-Lincoln 402-472-6400 From: users on behalf of Gilles Gouaillardet Sent: Wednesday, December 16, 2015 6:11 PM To: Open MPI Users Subject: Re: [OMPI users] performance issue with OpenMPI 1.10.1 binding is somehow involved in this, and i do not believe

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-16 Thread Gilles Gouaillardet
-6400 *From:* users on behalf of Ralph Castain *Sent:* Wednesday, December 16, 2015 1:52 PM *To:* Open MPI Users *Subject:* Re: [OMPI users] performance issue with OpenMPI 1.10.1 When I see such issues, I immediately start to think about binding patterns. How are

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-16 Thread Jingchao Zhang
llardet mailto:gil...@rist.or.jp>> Sent: Tuesday, December 15, 2015 12:11 AM To: Open MPI Users Subject: Re: [OMPI users] performance issue with OpenMPI 1.10.1 Hi, First, can you check how many MPI tasks and OpenMP threads are used with both ompi versions ? /* it should be 16 MPI tasks x n

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-16 Thread Ralph Castain
r > University of Nebraska-Lincoln > 402-472-6400 > > > From: users mailto:users-boun...@open-mpi.org>> > on behalf of Gilles Gouaillardet <mailto:gil...@rist.or.jp>> > Sent: Tuesday, December 15, 2015 12:11 AM > To: Open MPI Users > Subject: Re: [OMPI users] pe

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-16 Thread Jingchao Zhang
ers Subject: Re: [OMPI users] performance issue with OpenMPI 1.10.1 Hi, First, can you check how many MPI tasks and OpenMP threads are used with both ompi versions ? /* it should be 16 MPI tasks x no OpenMP threads */ can you also post both MPI task timing breakdown (from the output) i tried a s

Re: [OMPI users] performance issue with OpenMPI 1.10.1

2015-12-15 Thread Gilles Gouaillardet
Hi, First, can you check how many MPI tasks and OpenMP threads are used with both ompi versions ? /* it should be 16 MPI tasks x no OpenMP threads */ can you also post both MPI task timing breakdown (from the output) i tried a simple test with the VISCOSITY/in.wall.2d and i did not observe a