Re: [OMPI users] MPI_Bcast from OpenMPI

2009-04-24 Thread shan axida
, April 24, 2009 2:16:22 PM Subject: Re: [OMPI users] MPI_Bcast from OpenMPI Right. So, baseline performance seems reasonable, but there is an odd spike that seems difficult to explain. This is annoying, but again: how important is it to resolve that mystery? You can spend a few days trying to

Re: [OMPI users] MPI_Bcast from OpenMPI

2009-04-24 Thread Eugene Loh
Second cluster is almost the same features with the previous one From: Eugene Loh To: Open MPI Users Sent: Friday, April 24, 2009 1:26:14 AM Subject: Re: [OMPI users] MPI_Bcast from OpenMPI So, the remaining mystery is the 6x or so spike at 128 Mbyte.  Dunno.  How important is it to resolve that mystery?

Re: [OMPI users] MPI_Bcast from OpenMPI

2009-04-23 Thread shan axida
, centOS 4.6, Second cluster: 2.8 GHz Intel Xeon, 3GBmemory, Fedora core5 Openmpi1.3 is used in both cluster. From: Eugene Loh To: Open MPI Users Sent: Friday, April 24, 2009 1:26:14 AM Subject: Re: [OMPI users] MPI_Bcast from OpenMPI Okay. So, going back to

Re: [OMPI users] MPI_Bcast from OpenMPI

2009-04-23 Thread Eugene Loh
ble) but 131072 KB. It means around 128 MB.   From: Jeff Squyres To: Open MPI Users Sent: Thursday, April 23, 2009 8:23:52 PM Subject: Re: [OMPI users] MPI_Bcast from OpenMPI Very strange; 6 seconds for a 1MB broadcast over 64 processes is *way* too long.  Even 2.5 sec at 2MB seems too long

Re: [OMPI users] MPI_Bcast from OpenMPI

2009-04-23 Thread shan axida
Sorry, I had a mistake in calculation. Not 131072 (double) but 131072 KB. It means around 128 MB. From: Jeff Squyres To: Open MPI Users Sent: Thursday, April 23, 2009 8:23:52 PM Subject: Re: [OMPI users] MPI_Bcast from OpenMPI Very strange; 6 seconds for a

Re: [OMPI users] MPI_Bcast from OpenMPI

2009-04-23 Thread shan axida
To: Open MPI Users Sent: Thursday, April 23, 2009 8:23:52 PM Subject: Re: [OMPI users] MPI_Bcast from OpenMPI Very strange; 6 seconds for a 1MB broadcast over 64 processes is *way* too long. Even 2.5 sec at 2MB seems too long -- what is your network speed? I'm not entirely sure what you me

Re: [OMPI users] MPI_Bcast from OpenMPI

2009-04-23 Thread Jeff Squyres
Very strange; 6 seconds for a 1MB broadcast over 64 processes is *way* too long. Even 2.5 sec at 2MB seems too long -- what is your network speed? I'm not entirely sure what you mean by "4 link" on your graph. Without more information, I would first check your hardware setup to see if the