Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-25 Thread Ralph Castain
core file I get from orted - I see that req->proxy is Null in > pmix_server_process_msgs.c:421 . How this arises, I do not know. > > Thanks, > Ken Leiter > > -- > *From:* users [users-boun...@open-mpi.org] on behalf of Ralph Castain [ > r...@

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-25 Thread Leiter, Kenneth W CIV USARMY ARL (US)
.org] on behalf of Ralph Castain [r...@open-mpi.org] Sent: Thursday, June 11, 2015 4:27 PM To: Open MPI Users Subject: Re: [OMPI users] orted segmentation fault in pmix on master Yeah, I’d put my money on a race condition under that scenario. I don’t have anything that large I can test on, but I’

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Ralph Castain
r...@open-mpi.org] > Sent: Thursday, June 11, 2015 4:09 PM > To: Open MPI Users > Subject: Re: [OMPI users] orted segmentation fault in pmix on master > > So to be clear: each parent launches 10 children, and no other parents > participate in that spawn? > > And there

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Leiter, Kenneth W CIV USARMY ARL (US)
: Open MPI Users Subject: Re: [OMPI users] orted segmentation fault in pmix on master So to be clear: each parent launches 10 children, and no other parents participate in that spawn? And there is no threading in the app, yes? On Jun 11, 2015, at 12:53 PM, Leiter, Kenneth W CIV USARMY ARL (US

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Ralph Castain
; Sent: Thursday, June 11, 2015 2:36 PM > To: Open MPI Users > Subject: Re: [OMPI users] orted segmentation fault in pmix on master > > Hi Ken, > > Could you post the output of your ompi_info? > > I have PrgEnv-gnu/5.2.56 and gcc/4.9.2 loaded in my env on nersc system.

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Ralph Castain
th.w.leiter2....@mail.mil>>: >> I will try on a non-cray machine as well. >> >> - Ken >> >> -Original Message- >> From: users [mailto:users-boun...@open-mpi.org >> <mailto:users-boun...@open-mpi.org>] On Behalf Of Howard Pritchard &g

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Leiter, Kenneth W CIV USARMY ARL (US)
behalf of Howard Pritchard [hpprit...@gmail.com] Sent: Thursday, June 11, 2015 2:36 PM To: Open MPI Users Subject: Re: [OMPI users] orted segmentation fault in pmix on master Hi Ken, Could you post the output of your ompi_info? I have PrgEnv-gnu/5.2.56 and gcc/4.9.2 loaded in my env on nersc system

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Howard Pritchard
> > Howard > > > > 2015-06-11 12:10 GMT-06:00 Leiter, Kenneth W CIV USARMY ARL (US) < > kenneth.w.leiter2@mail.mil>: > >> I will try on a non-cray machine as well. >> >> - Ken >> >> -----Original Message- >> From: use

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Leiter, Kenneth W CIV USARMY ARL (US)
Subject: Re: [OMPI users] orted segmentation fault in pmix on master Ken, Why are the qsub ncpus and mpiirun -np different values. Doug On Jun 11, 2015, at 12:08 PM, Leiter, Kenneth W CIV USARMY ARL (US) wrote: > Hi Howard, > > My qsub command is: > qsub -l select=10:ncpus=32:mp

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Douglas L Reeder
n try this on, an XE6 and XC30. > > - Ken Leiter > > -Original Message- > From: users [mailto:users-boun...@open-mpi.org] On Behalf Of Howard Pritchard > Sent: Thursday, June 11, 2015 12:21 PM > To: Open MPI Users > Subject: Re: [OMPI users] orted segmentation fault in

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Leiter, Kenneth W CIV USARMY ARL (US)
: users [users-boun...@open-mpi.org] on behalf of Howard Pritchard [hpprit...@gmail.com] Sent: Thursday, June 11, 2015 2:36 PM To: Open MPI Users Subject: Re: [OMPI users] orted segmentation fault in pmix on master Hi Ken, Could you post the output of your ompi_info? I have PrgEnv-gnu/5.2.56 and

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Ralph Castain
-Original Message- > From: users [mailto:users-boun...@open-mpi.org > <mailto:users-boun...@open-mpi.org>] On Behalf Of Howard Pritchard > Sent: Thursday, June 11, 2015 12:21 PM > To: Open MPI Users > Subject: Re: [OMPI users] orted segmentation fault in pmix on master

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Howard Pritchard
chard > Sent: Thursday, June 11, 2015 12:21 PM > To: Open MPI Users > Subject: Re: [OMPI users] orted segmentation fault in pmix on master > > Hello Ken, > > Could you give the details of the allocation request (qsub args) as well > as the mpirun command line args? I'm try

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Leiter, Kenneth W CIV USARMY ARL (US)
I will try on a non-cray machine as well. - Ken -Original Message- From: users [mailto:users-boun...@open-mpi.org] On Behalf Of Howard Pritchard Sent: Thursday, June 11, 2015 12:21 PM To: Open MPI Users Subject: Re: [OMPI users] orted segmentation fault in pmix on master Hello Ken

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Leiter, Kenneth W CIV USARMY ARL (US)
: [OMPI users] orted segmentation fault in pmix on master Hello Ken, Could you give the details of the allocation request (qsub args) as well as the mpirun command line args? I'm trying to reproduce on the nersc system. It would be interesting if you have access to a similar size non-cray cl

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Nathan Hjelm
Won't help him. aprun does not support dynamics. -Nathan On Thu, Jun 11, 2015 at 12:43:38PM -0400, Joshua Ladd wrote: >Ken, > >Could you try to launch the job with aprun instead of mpirun? > >Thanks, > >Josh >On Thu, Jun 11, 2015 at 12:21 PM, Howard Pritchard >wrote: >

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Joshua Ladd
Ken, Could you try to launch the job with aprun instead of mpirun? Thanks, Josh On Thu, Jun 11, 2015 at 12:21 PM, Howard Pritchard wrote: > Hello Ken, > > Could you give the details of the allocation request (qsub args) > as well as the mpirun command line args? I'm trying to reproduce > on t

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Howard Pritchard
Hello Ken, Could you give the details of the allocation request (qsub args) as well as the mpirun command line args? I'm trying to reproduce on the nersc system. It would be interesting if you have access to a similar size non-cray cluster if you get the same problems. Howard 2015-06-11 9:13 G

Re: [OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Ralph Castain
I don’t have a Cray, but let me see if I can reproduce this on something else > On Jun 11, 2015, at 7:26 AM, Leiter, Kenneth W CIV USARMY ARL (US) > wrote: > > Hello, > > I am attempting to use the openmpi development master for a code that uses > dynamic process management (i.e. MPI_Comm_spaw

[OMPI users] orted segmentation fault in pmix on master

2015-06-11 Thread Leiter, Kenneth W CIV USARMY ARL (US)
Hello, I am attempting to use the openmpi development master for a code that uses dynamic process management (i.e. MPI_Comm_spawn) on our Cray XC40 at the Army Research Laboratory. After reading through the mailing list I came to the conclusion that the master branch is the only hope for getting t