On Dec 14, 2011, at 3:48 PM, Prentice Bisbal wrote:
> I realized this after I wrote that and clarified it in a subsequent e-mail.
> Which you probably just read. ;-)
After I sent the mail, I saw it. Oops. :-)
--
Jeff Squyres
jsquy...@cisco.com
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On 12/14/2011 03:39 PM, Jeff Squyres wrote:
> On Dec 14, 2011, at 3:21 PM, Prentice Bisbal wrote:
>
>> For example, your configure command,
>>
>> ./configure --prefix=/opt/openmpi/intel CC=gcc CXX=g++ F77=ifort FC=ifort
>>
>> Doesn't tell Open MPI to use ifcort for mpif90 and mpif77.
> Actually, t
On Dec 14, 2011, at 3:21 PM, Prentice Bisbal wrote:
> For example, your configure command,
>
> ./configure --prefix=/opt/openmpi/intel CC=gcc CXX=g++ F77=ifort FC=ifort
>
> Doesn't tell Open MPI to use ifcort for mpif90 and mpif77.
Actually, that's not correct.
For Open MPI, our wrapper compil
On 12/14/2011 03:29 PM, Micah Sklut wrote:
> Okay thanks Prentice.
>
> I understand what you are saying about specifying the compilers during
> configure.
> Perhaps, that alone would have solved the problem, but removing the
> 1.4.2 ompi installation worked as well.
>
> Micah
>
Well, to clarify my
Okay thanks Prentice.
I understand what you are saying about specifying the compilers during
configure.
Perhaps, that alone would have solved the problem, but removing the 1.4.2
ompi installation worked as well.
Micah
On Wed, Dec 14, 2011 at 3:24 PM, Prentice Bisbal wrote:
>
> On 12/14/2011 01
On 12/14/2011 01:20 PM, Fernanda Oliveira wrote:
> Hi Micah,
>
> I do not know if it is exactly what you need but I know that there are
> environment variables to use with intel mpi. They are: I_MPI_CC,
> I_MPI_CXX, I_MPI_F77, I_MPI_F90. So, you can set this using 'export'
> for bash, for instance
On 12/14/2011 12:21 PM, Micah Sklut wrote:
> Hi Gustav,
>
> I did read Price's email:
>
> When I do "which mpif90", i get:
> /opt/openmpi/intel/bin/mpif90
> which is the desired directory/binary
>
> As I mentioned, the config log file indicated it was using ifort, and
> had no mention of gfortran.
I uninstalled 1.4.2 with rpm -e ompi, and now my existing mpi binaries are
working.
Thanks so much for everyone's help.
On Wed, Dec 14, 2011 at 3:12 PM, Tim Prince wrote:
> On 12/14/2011 12:52 PM, Micah Sklut wrote:
>
>> Hi Gustavo,
>>
>> Here is the output of :
>> barells@ip-10-17-153-123:~> /
On 12/14/2011 12:52 PM, Micah Sklut wrote:
Hi Gustavo,
Here is the output of :
barells@ip-10-17-153-123:~> /opt/openmpi/intel/bin/mpif90 -showme
gfortran -I/usr/lib64/mpi/gcc/openmpi/include -pthread
-I/usr/lib64/mpi/gcc/openmpi/lib64 -L/usr/lib64/mpi/gcc/openmpi/lib64
-lmpi_f90 -lmpi_f77 -lmpi
On 12/14/2011 1:20 PM, Fernanda Oliveira wrote:
Hi Micah,
I do not know if it is exactly what you need but I know that there are
environment variables to use with intel mpi. They are: I_MPI_CC,
I_MPI_CXX, I_MPI_F77, I_MPI_F90. So, you can set this using 'export'
for bash, for instance or directl
On Dec 14, 2011, at 12:52 PM, Micah Sklut wrote:
> I do see what you are saying about the 1.4.2 and 1.4.4 components.
> I'm not sure why that is, but there seems to be some conflict with the
> existing openmpi, before recently installed 1.4.4 and trying to install with
> ifort.
Did you instal
Hi Micah,
I do not know if it is exactly what you need but I know that there are
environment variables to use with intel mpi. They are: I_MPI_CC,
I_MPI_CXX, I_MPI_F77, I_MPI_F90. So, you can set this using 'export'
for bash, for instance or directly when you run.
I use in my bashrc:
export I_MPI
Hi Gustavo,
Here is the output of :
barells@ip-10-17-153-123:~> /opt/openmpi/intel/bin/mpif90 -showme
gfortran -I/usr/lib64/mpi/gcc/openmpi/include -pthread
-I/usr/lib64/mpi/gcc/openmpi/lib64 -L/usr/lib64/mpi/gcc/openmpi/lib64
-lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynam
How about the output of this?
/opt/openmpi/intel/bin/mpif90 -showme
Anyway, something seems to be wrong with your OpenMPI installation.
Just read the output of your ompi_info in your email below.
You will see that the OpenMPI version is 1.4.4.
However, most components are version 1.4.2.
Do you ag
Hi Gustav,
I did read Price's email:
When I do "which mpif90", i get:
/opt/openmpi/intel/bin/mpif90
which is the desired directory/binary
As I mentioned, the config log file indicated it was using ifort, and had
no mention of gfortran.
Below is the output from ompi_info. It shows reference to th
Hi Micah
Did you read Tim Prince's email to you? Check it out.
Best thing is to set your environment variables [PATH, LD_LIBRARY_PATH, intel
setup]
in your initialization file, .profile/.bashrc or .[t]cshrc.
What is the output of 'ompi_info'? [From your ifort-built OpenMPI.]
Does it show ifor
Thanks for your thoughts,
It would certainly appear that it is a PATH issue, but I still haven't
figured it out.
When I type the ifort command, ifort does run.
The intel path is in my PATH and is the first directory listed.
Looking at the configure.log, there is nothing indicating use or mention
Hi Micah
Is ifort in your PATH?
If not, the OpenMPI configure script will use any fortran compiler it finds
first, which may be gfortran.
You need to run the Intel compiler startup script before you run the OpenMPI
configure.
The easy thing to do is to source the Intel script inside your .profi
On 12/14/2011 9:49 AM, Micah Sklut wrote:
I have installed openmpi for gfortran, but am now attempting to install
openmpi as ifort.
I have run the following configuration:
./configure --prefix=/opt/openmpi/intel CC=gcc CXX=g++ F77=ifort FC=ifort
The install works successfully, but when I run
/
Hi All,
I have installed openmpi for gfortran, but am now attempting to install
openmpi as ifort.
I have run the following configuration:
./configure --prefix=/opt/openmpi/intel CC=gcc CXX=g++ F77=ifort FC=ifort
The install works successfully, but when I run
/opt/openmpi/intel/bin/mpif90, it run
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