Reuti wrote:
Hi,
Am 24.12.2008 um 07:55 schrieb Sangamesh B:
Thanks Reuti. That sorted out the problem.
Now mpiblast is able to run, but only on single node. i.e. mpiformatdb
-> 4 fragments, mpiblast - 4 processes. Since each node is having 4
cores, the job will run on a single node and works
Hi,
Am 24.12.2008 um 07:55 schrieb Sangamesh B:
Thanks Reuti. That sorted out the problem.
Now mpiblast is able to run, but only on single node. i.e. mpiformatdb
-> 4 fragments, mpiblast - 4 processes. Since each node is having 4
cores, the job will run on a single node and works fine. With 8
Thanks Reuti. That sorted out the problem.
Now mpiblast is able to run, but only on single node. i.e. mpiformatdb
-> 4 fragments, mpiblast - 4 processes. Since each node is having 4
cores, the job will run on a single node and works fine. With 8
processes, the job fails with following error messag
Hi,
Am 23.12.2008 um 12:03 schrieb Sangamesh B:
Hello,
I've compiled MPIBLAST-1.5.0-pio app on Rocks 4.3,Voltaire
infiniband based Linux cluster using Open MPI-1.2.8 + intel 10
compilers.
The job is not running. Let me explain the configs:
SGE job script:
$ cat sge_submit.sh
#!/bin/ba
Hello,
I've compiled MPIBLAST-1.5.0-pio app on Rocks 4.3,Voltaire
infiniband based Linux cluster using Open MPI-1.2.8 + intel 10
compilers.
The job is not running. Let me explain the configs:
SGE job script:
$ cat sge_submit.sh
#!/bin/bash
#$ -N OMPI-Blast-Job
#$ -S /bin/bash
#$ -cwd
