Re: [OMPI users] libnuma issue

2009-04-16 Thread Francesco Pietra
Did not work the way I implemented the suggestion. ./configure CC=/..cce..icc CXX/. cce..icpc F77=/..fce..ifort FC=/..fce..ifort --with-libnuma=/usr --prefix=/usr --enable-static ./configure CC=/..cce..icc CXX/. cce..icpc F77=/..fce..ifort FC=/..fce..ifort --with-libnuma=/usr --prefix=/usr then e

Re: [OMPI users] libnuma issue

2009-04-15 Thread Nysal Jan
You could try statically linking the Intel-provided libraries. Use LDFLAGS=-static-intel --Nysal On Wed, 2009-04-15 at 21:03 +0200, Francesco Pietra wrote: > On Wed, Apr 15, 2009 at 8:39 PM, Prentice Bisbal wrote: > > Francesco Pietra wrote: > >> I used --with-libnuma=/usr since Prentice Bisbal

Re: [OMPI users] libnuma issue

2009-04-15 Thread Francesco Pietra
On Wed, Apr 15, 2009 at 8:39 PM, Prentice Bisbal wrote: > Francesco Pietra wrote: >> I used --with-libnuma=/usr since Prentice Bisbal's suggestion and it >> worked. Unfortunately, I found no way to fix the failure in finding >> libimf.so when compiling openmpi-1.3.1 with intels, as you have seen >

Re: [OMPI users] libnuma issue

2009-04-15 Thread Prentice Bisbal
Francesco Pietra wrote: > I used --with-libnuma=/usr since Prentice Bisbal's suggestion and it > worked. Unfortunately, I found no way to fix the failure in finding > libimf.so when compiling openmpi-1.3.1 with intels, as you have seen > in other e-mail from me. And gnu compilers (which work well w

Re: [OMPI users] libnuma issue

2009-04-15 Thread Francesco Pietra
I used --with-libnuma=/usr since Prentice Bisbal's suggestion and it worked. Unfortunately, I found no way to fix the failure in finding libimf.so when compiling openmpi-1.3.1 with intels, as you have seen in other e-mail from me. And gnu compilers (which work well with both openmpi and the slower

Re: [OMPI users] libnuma issue

2009-04-15 Thread Jeff Squyres
On Apr 6, 2009, at 4:24 PM, Prentice Bisbal wrote: > I would appreciate help in circumventing the problem. I believe you need --with-libnuma=/usr. Sorry for the late reply. FWIW, the above is correct -- you should use --with-libnuma=/usr, not --with-libnuma=/usr/lib. Please also note

Re: [OMPI users] libnuma issue

2009-04-06 Thread Prentice Bisbal
Francesco Pietra wrote: > I am posting again more specifically because it may have been buried > in a more generic thread. > > With debian linux amd64 lenny and openmpi-1.3.1 > > ./configure cc=/opt/intel/cce/10.1.015/bin/icc > cxx=/opt/intel/cce/10.1.015/bin/icpc > F77=/opt/intel/fce/10.1.015/bi

Re: [OMPI users] libnuma issue

2009-04-03 Thread Francesco Pietra
"I was not sure" before your mail. I was sure after that. I'm a chemist with little knowledge of systems. I used in the past to make symlinks to outdated or upgraded libraries. It worked, but I was aware of the risk. This case has no risk. I was in a mess, now partly out. The code I'm interested i

Re: [OMPI users] libnuma issue

2009-04-03 Thread John Hearns
2009/4/3 Francesco Pietra : > I was not sure whether that is a technically correct procedure. It works. > Thanks > It most certainly is not. But I have been a Unix system admin for many years. I have done things which I am not proud of If I ever offer to let you use my keyboard, wash your

Re: [OMPI users] libnuma issue

2009-04-03 Thread Francesco Pietra
I was not sure whether that is a technically correct procedure. It works. Thanks francesco On Fri, Apr 3, 2009 at 6:05 PM, John Hearns wrote: > 2009/4/3 Francesco Pietra : >> > "expected file /usr/lib/include/numa.h was not found" >> >> In debian amd64 lenny numa.h has a different location >> "/u

Re: [OMPI users] libnuma issue

2009-04-03 Thread John Hearns
2009/4/3 Francesco Pietra : > > "expected file /usr/lib/include/numa.h was not found" > > In debian amd64 lenny numa.h has a different location > "/usr/include/numa.h". Attached is the config.log. > > I would appreciate help in circumventing the problem. It is /usr/include/numa.h on SuSE also (SLE

[OMPI users] libnuma issue

2009-04-03 Thread Francesco Pietra
I am posting again more specifically because it may have been buried in a more generic thread. With debian linux amd64 lenny and openmpi-1.3.1 ./configure cc=/opt/intel/cce/10.1.015/bin/icc cxx=/opt/intel/cce/10.1.015/bin/icpc F77=/opt/intel/fce/10.1.015/bin/ifort FC=/opt/intel/fce/10.1.015/bin/i