Re: [OMPI users] lammps MD code fails with Open MPI 1.3

2009-02-20 Thread Jeff Squyres
On Feb 20, 2009, at 10:08 AM, Jeff Pummill wrote: It's probably not the same issue as this is one of the very few codes that I maintain which is C++ and not fortran :-( Ok. Note that the error Nysal pointed out was a problem with our handling of stdin. That might be an issue as well; shou

Re: [OMPI users] lammps MD code fails with Open MPI 1.3

2009-02-20 Thread Jeff Pummill
It's probably not the same issue as this is one of the very few codes that I maintain which is C++ and not fortran :-( It behaved similarly on another system when I built it against a new version (1.0??) of MVAPICH. I had to roll back a version from that as well. I may contact the lammps peop

Re: [OMPI users] lammps MD code fails with Open MPI 1.3

2009-02-20 Thread Jeff Squyres
Actually, there was a big Fortran bug that crept in after 1.3 that was just fixed on the trunk last night. If you're using Fortran applications with some compilers (e.g., Intel), the 1.3.1 nightly snapshots may have hung in some cases. The problem should be fixed in tonight's 1.3.1 nightl

Re: [OMPI users] lammps MD code fails with Open MPI 1.3

2009-02-20 Thread Nysal Jan
It could be the same bug reported here http://www.open-mpi.org/community/lists/users/2009/02/8010.php Can you try a recent snapshot of 1.3.1 (http://www.open-mpi.org/nightly/v1.3/) to verify if this has been fixed --Nysal On Thu, 2009-02-19 at 16:09 -0600, Jeff Pummill wrote: > I built a fresh v

Re: [OMPI users] lammps MD code fails with Open MPI 1.3

2009-02-19 Thread Jeff Squyres
Is it possible to attach to any of the MPI processes and see where it is hung? On Feb 19, 2009, at 5:09 PM, Jeff Pummill wrote: I built a fresh version of lammps v29Jan09 against Open MPI 1.3 which in turn was built with Gnu compilers v4.2.4 on an Ubuntu 8.04 x86_64 box. This Open MPI bui

[OMPI users] lammps MD code fails with Open MPI 1.3

2009-02-19 Thread Jeff Pummill
I built a fresh version of lammps v29Jan09 against Open MPI 1.3 which in turn was built with Gnu compilers v4.2.4 on an Ubuntu 8.04 x86_64 box. This Open MPI build was able to generate usable binaries such as XHPL and NPB, but the lammps binary it generated was not usable. I tried it with a co