Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Reuti
t; n0005 >>> n0004 >>> n0003 >>> n0002 >>> n0001 >>> n >>> >>> but, since I have compiled OpenMPI using the "--with-tm", it appears >>> that OpenMPI is not using the $PBS_NODEFILE (which I tested by modifying >>> the torque pbs_m

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Jason Gans
*From:* users [users-boun...@open-mpi.org] on behalf of Ralph Castain [r...@open-mpi.org] *Sent:* Friday, November 22, 2013 11:04 AM *To:* Open MPI Users *Subject:* Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI Really shoul

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Ralph Castain
On Nov 22, 2013, at 10:26 AM, Jason Gans wrote: > On 11/22/13 11:15 AM, Ralph Castain wrote: >> >> On Nov 22, 2013, at 10:03 AM, Reuti wrote: >> >>> Am 22.11.2013 um 18:56 schrieb Jason Gans: >>> On 11/22/13 10:47 AM, Reuti wrote: > Hi, > > Am 22.11.2013 um 17:32 schrieb Ga

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Jason Gans
On 11/22/13 11:15 AM, Ralph Castain wrote: On Nov 22, 2013, at 10:03 AM, Reuti > wrote: Am 22.11.2013 um 18:56 schrieb Jason Gans: On 11/22/13 10:47 AM, Reuti wrote: Hi, Am 22.11.2013 um 17:32 schrieb Gans, Jason D: I would like to run an instance of my

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Lloyd Brown
NODEFILE that contained "slot=xx" > information for each node. mpirun complained when I did this). > > Regards, > > Jason > > > *From:* users [users-boun...@open-mpi.org] on behalf of Ra

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Ralph Castain
On Nov 22, 2013, at 10:03 AM, Reuti wrote: > Am 22.11.2013 um 18:56 schrieb Jason Gans: > >> On 11/22/13 10:47 AM, Reuti wrote: >>> Hi, >>> >>> Am 22.11.2013 um 17:32 schrieb Gans, Jason D: >>> I would like to run an instance of my application on every *core* of a small cluster. I

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Gans, Jason D
ained when I did this). Regards, Jason From: users [users-boun...@open-mpi.org] on behalf of Ralph Castain [r...@open-mpi.org] Sent: Friday, November 22, 2013 11:04 AM To: Open MPI Users Subject: Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI Really shouldn't matter -

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Ralph Castain
Really shouldn't matter - this is clearly a bug in OMPI if it is doing mapping as you describe. Out of curiosity, have you tried the 1.7 series? Does it behave the same? I can take a look at the code later today and try to figure out what happened. On Nov 22, 2013, at 9:56 AM, Jason Gans wrote

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Reuti
Am 22.11.2013 um 18:56 schrieb Jason Gans: > On 11/22/13 10:47 AM, Reuti wrote: >> Hi, >> >> Am 22.11.2013 um 17:32 schrieb Gans, Jason D: >> >>> I would like to run an instance of my application on every *core* of a >>> small cluster. I am using Torque 2.5.12 to run jobs on the cluster. The >

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Jason Gans
On 11/22/13 10:47 AM, Reuti wrote: Hi, Am 22.11.2013 um 17:32 schrieb Gans, Jason D: I would like to run an instance of my application on every *core* of a small cluster. I am using Torque 2.5.12 to run jobs on the cluster. The cluster in question is a heterogeneous collection of machines th

Re: [OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Reuti
Hi, Am 22.11.2013 um 17:32 schrieb Gans, Jason D: > I would like to run an instance of my application on every *core* of a small > cluster. I am using Torque 2.5.12 to run jobs on the cluster. The cluster in > question is a heterogeneous collection of machines that are all past their > prime.

[OMPI users] Oversubscription of nodes with Torque and OpenMPI

2013-11-22 Thread Gans, Jason D
Hello, I would like to run an instance of my application on every *core* of a small cluster. I am using Torque 2.5.12 to run jobs on the cluster. The cluster in question is a heterogeneous collection of machines that are all past their prime. Specifically, the number of cores ranges from 2-8. H