> -Bill L.
>
> From: users [users-boun...@open-mpi.org] on behalf of Ralph Castain
> [r...@open-mpi.org]
> Sent: Friday, April 10, 2015 5:28 PM
> To: Open MPI Users
> Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
>
> This will be in the next nightly 1.8.5 ta
t: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
This will be in the next nightly 1.8.5 tarball.
Bill: can you test it to see if we’ve fixed the problem?
Thanks
Ralph
On Apr 10, 2015, at 2:15 PM, Ralph Castain
mailto:r...@open-mpi.org>> wrote:
Okay, I at least now understand t
0x7f7287c740c9]
>> [csclprd3-0-9:27284] [ 3]
>> /hpc/apps/mpi/openmpi/1.8.2/lib/libmpi.so.1(ompi_free_list_resize_mt+0x40)[0x7f7287c74200]
>> [csclprd3-0-9:27284] [ 4]
>> /hpc/apps/mpi/openmpi/1.8.2/lib/openmpi/mca_bml_r2.so(+0x138e)[0x7f72812c638e]
>> [csclprd3-0-9:27
7272] [ 6]
> /hpc/apps/mpi/openmpi/1.8.2/lib/libmpi.so.1(ompi_mpi_init+0x8d6)[0x7f646af43e26]
> [csclprd3-0-9:27272] [ 7]
> /hpc/apps/mpi/openmpi/1.8.2/lib/libmpi.so.1(MPI_Init+0x170)[0x7f646af62e10]
> [csclprd3-0-9:27272] [ 8] /hpc/apps/benchmarks/hpl/xhpl[0x401571]
> [csclprd3-0-9
b/openmpi/mca_pml_ob1.so(mca_pml_ob1_add_procs+0xd5)[0x7f645f5344e5]
> [csclprd3-0-9:27272] [ 6]
> /hpc/apps/mpi/openmpi/1.8.2/lib/libmpi.so.1(ompi_mpi_init+0x8d6)[0x7f646af43e26]
> [csclprd3-0-9:27272] [ 7]
> /hpc/apps/mpi/openmpi/1.8.2/lib/libmpi.so.1(MPI_Init+0x170)[0x7f646af62e10]
>
___
From: users [users-boun...@open-mpi.org] on behalf of Ralph Castain
[r...@open-mpi.org]
Sent: Wednesday, April 08, 2015 11:31 AM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
Just for clarity: does the BIOS on the LGA2011 system have HT enabled?
> very application dependent. Some apps appear to benefit, while others can
> even suffer from it.
>
> I think we should support a mix of nodes in this usage, so I’ll try to come
> up with a way to do so.
>
>>
>> I'm going to go through all the OpenMPI
>> a
open-mpi.org>] on
behalf of Ralph Castain [r...@open-mpi.org<mailto:r...@open-mpi.org>]
Sent: Tuesday, April 07, 2015 7:32 PM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
I’m not sure our man pages are good enough to answer your question, but here is
the
.@open-mpi.org]
> Sent: Tuesday, April 07, 2015 7:32 PM
> To: Open MPI Users
> Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
>
> I’m not sure our man pages are good enough to answer your question, but here
> is the URL
>
> http://www.open-mpi.org/doc/v1.8
es numactl-devel, whether to HT or non-HT nodes
>
> Bill L.
>
> From: users [users-boun...@open-mpi.org <mailto:users-boun...@open-mpi.org>]
> on behalf of Lane, William [william.l...@cshs.org
> <mailto:william.l...@cshs.org>]
> Sent: Wednesday, April 08, 2015 9:29
ybe just NUMA nodes that also have hyperthreading capabilities?
Bill L.
From: users [users-boun...@open-mpi.org] on behalf of Lane, William
[william.l...@cshs.org]
Sent: Wednesday, April 08, 2015 9:29 AM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2
m: users [users-boun...@open-mpi.org<mailto:users-boun...@open-mpi.org>] on
behalf of Ralph Castain [r...@open-mpi.org<mailto:r...@open-mpi.org>]
Sent: Monday, April 06, 2015 1:39 PM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
Hmmm…well, that shoul
ere a
> URL I can I find a copy of the manpages for OpenMPI 1.8.2?
>
> Thanks for your help,
>
> -Bill Lane
>
> From: users [users-boun...@open-mpi.org] on behalf of Ralph Castain
> [r...@open-mpi.org]
> Sent: Monday, April 06, 2015 1:39 PM
> To: Open MPI Users
&g
.@open-mpi.org]
Sent: Monday, April 06, 2015 1:39 PM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
Hmmm…well, that shouldn’t be the issue. To check, try running it with “bind-to
none”. If you can get a backtrace telling us where it is crashing, that would
a
: users [users-boun...@open-mpi.org] on behalf of Ralph Castain
> [r...@open-mpi.org]
> Sent: Sunday, April 05, 2015 6:09 PM
> To: Open MPI Users
> Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
>
>
>> On Apr 5, 2015, at 5:58 PM, Lane, William > <mailt
Sent: Sunday, April 05, 2015 6:09 PM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
On Apr 5, 2015, at 5:58 PM, Lane, William
mailto:william.l...@cshs.org>> wrote:
I think some of the Intel Blade systems in the cluster are
dual core, but don't suppor
alf of Ralph Castain
> [r...@open-mpi.org]
> Sent: Wednesday, April 01, 2015 8:40 AM
> To: Open MPI Users
> Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
>
> Bingo - you said the magic word. This is a terminology issue. When we say
> "core", we mean
Ralph.
Bill L.
From: users [users-boun...@open-mpi.org] on behalf of Ralph Castain
[r...@open-mpi.org]
Sent: Wednesday, April 01, 2015 8:40 AM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
Bingo - you said the magic word. This i
are defined
> for any of the above systems.
>
> -Bill L.
>
>
> --
> *From:* users [users-boun...@open-mpi.org] on behalf of Ralph Castain [
> r...@open-mpi.org]
> *Sent:* Wednesday, April 01, 2015 5:04 AM
> *To:* Open MPI Users
> *Subject:*
Sent: Wednesday, April 01, 2015 5:04 AM
To: Open MPI Users
Subject: Re: [OMPI users] OpenMPI 1.8.2 problems on CentOS 6.3
The warning about binding to memory is due to not having numactl-devel
installed on the system. The job would still run, but we are warning you that
we cannot bind memory to the
The warning about binding to memory is due to not having numactl-devel
installed on the system. The job would still run, but we are warning you
that we cannot bind memory to the same domain as the core where we bind the
process. Can cause poor performance, but not fatal. I forget the name of
the pa
I'm having problems running OpenMPI jobs
(using a hostfile) on an HPC cluster running
ROCKS on CentOS 6.3. I'm running OpenMPI
outside of Sun Grid Engine (i.e. it is not submitted
as a job to SGE). The program being run is a LAPACK
benchmark. The commandline parameter I'm
using to run the jobs is:
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