Re: [OMPI users] Nonblocking neighborhood collectives with distributed graph creation

2016-03-07 Thread Gilles Gouaillardet
Jun, a patch is available at https://github.com/ggouaillardet/ompi-release/commit/f277beace9fbe8dd71f733602b5d4b0344d77a29.patch this is not a bulletproof one, but it does fix your problem. in this case, MPI_Ineighbor_alltoallw is invoked with sendbuf == recvbuf, and internally, libnbc consid

Re: [OMPI users] Nonblocking neighborhood collectives with distributed graph creation

2016-03-07 Thread Jun Kudo
Giles, Thanks for the small bug fix. It helped clear up that test case but I'm again running into another segmentation fault on a more complicated problem. I've attached another 'working' example. This time I am using the MPI_Ineighbor_alltoallw on a triangular topology; node 0 communicates bi-

Re: [OMPI users] Nonblocking neighborhood collectives with distributed graph creation

2016-02-29 Thread Gilles Gouaillardet
Thanks for the report and the test case, this is a bug and i pushed a commit to master. for the time being, you can download a patch for v1.10 at https://github.com/ggouaillardet/ompi-release/commit/4afdab0aa86e5127767c4dfbdb763b4cb641e37a.patch Cheers, Gilles On 3/1/2016 12:17 AM, Jun Kudo

[OMPI users] Nonblocking neighborhood collectives with distributed graph creation

2016-02-29 Thread Jun Kudo
Hello, I'm trying to use the neighborhood collective communication capabilities (MPI_Ineighbor_x) of MPI coupled with the distributed graph constructor (MPI_Dist_graph_create_adjacent) but I'm encountering a segmentation fault on a test case. I have attached a 'working' example where I create a MP