Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 05:36:19PM -0400, Jeff Squyres wrote: > On Mar 31, 2009, at 5:25 PM, Kevin McManus wrote: > > >--- MCA component mtl:psm (m4 configuration macro) > >checking for MCA component mtl:psm compile mode... static > >checking --with-psm value... simple ok (unspecified) > >checking

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Jeff Squyres
On Mar 31, 2009, at 5:25 PM, Kevin McManus wrote: --- MCA component mtl:psm (m4 configuration macro) checking for MCA component mtl:psm compile mode... static checking --with-psm value... simple ok (unspecified) checking --with-psm-libdir value... sanity check ok (/usr/lib64) checking psm.h usab

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 04:59:00PM -0400, Jeff Squyres wrote: > My goal in having you try that statement in a standalone shell script > wasn't the success or failure of the uname command -- but rather to > figure out if something in that statement itself was causing the > syntax error. > > A

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Jeff Squyres
My goal in having you try that statement in a standalone shell script wasn't the success or failure of the uname command -- but rather to figure out if something in that statement itself was causing the syntax error. Apparently it is not. There's an errant character elsewhere that is cau

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 10:11:17PM +0200, Bogdan Costescu wrote: > On Tue, 31 Mar 2009, Bogdan Costescu wrote: > > >'uname -X' is valid on Solaris, but not on Linux. > > Not good to reply to oneself, but I've looked at the archives and > realized that 'uname -X' comes from a message of the OP. M

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 09:57:02PM +0200, Bogdan Costescu wrote: > On Tue, 31 Mar 2009, Jeff Squyres wrote: > > >UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` > > Not sure what you want to achieve here... 'uname -X' is valid on > Solaris, but not on Linux. The OP has indicated alrea

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Bogdan Costescu
On Tue, 31 Mar 2009, Bogdan Costescu wrote: 'uname -X' is valid on Solaris, but not on Linux. Not good to reply to oneself, but I've looked at the archives and realized that 'uname -X' comes from a message of the OP. My guess is that the same source directory was used to build for Solaris p

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Bogdan Costescu
On Tue, 31 Mar 2009, Jeff Squyres wrote: UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` Not sure what you want to achieve here... 'uname -X' is valid on Solaris, but not on Linux. The OP has indicated already that he is running this on Linux (SLES) so the above line is supposed t

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 01:37:22PM -0400, Jeff Squyres wrote: > On Mar 31, 2009, at 1:31 PM, Terry Dontje wrote: > > >Can you manually run UNAME_REL=`(/bin/uname -X|grep Release|sed -e > >'s/.*= //')` in your shell without error? > > > > Better would be to put this small script by itself: > > #!

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Kevin McManus
On Tue, Mar 31, 2009 at 01:31:12PM -0400, Terry Dontje wrote: > I was talking with Jeff Squyres about your issue and he thinks the > config.guess issue needs to be resolved first, even though your > specification of x86_64 seems to get you by. > > So, do you still see the unexpected "(" if you t

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Jeff Squyres
On Mar 31, 2009, at 1:31 PM, Terry Dontje wrote: Can you manually run UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` in your shell without error? Better would be to put this small script by itself: #! /bin/sh UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` echo got $UN

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-31 Thread Terry Dontje
ype; you must specify one Can you manually run UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')` in your shell without error? --td Terry Dontje wrote: Date: Mon, 30 Mar 2009 19:05:25 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudio c

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
> Grasping at straws, I suggest putting /bin before /usr/bin in your > PATH (we may be using different versions of grep, gawk, etc.). Try > removing Absoft, Intel, and Pathscale compilers from your environment. I have set .bashrc to give me ~> echo $PATH /bin:/sbin:/usr/bin:/usr/sbin/:/usr/local/

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 03:15:18PM -0400, Terry Dontje wrote: > > > > > >->ls -l /bin/sh > >lrwxrwxrwx 1 root root 4 2008-04-02 02:13 /bin/sh -> bash > > > I am using tcsh it may take me a while to set up bash for myself. I too run tcsh as a login shell but the scripts are all shebanged to run

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 02:01:13PM -0500, Ethan Mallove wrote: > On Mon, Mar/30/2009 07:26:28PM, Kevin McManus wrote: > > > > you run 'uname -X'? > > > > > > uname -X gives me "invalid option" on RHEL {4,5} and SLES {9,10}. > > > > which is what I would expect > > do you also need to supply a pla

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Terry Dontje
Date: Mon, 30 Mar 2009 19:05:25 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudioconfigure problem To: Open MPI Users Message-ID: <20090330180524.gt13...@gre.ac.uk> Content-Type: text/plain; charset=us-ascii > > I will try to r

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Mon, Mar/30/2009 07:26:28PM, Kevin McManus wrote: > > > you run 'uname -X'? > > > > uname -X gives me "invalid option" on RHEL {4,5} and SLES {9,10}. > > which is what I would expect > do you also need to supply a platform identity/type as an argument? > > > Post your config.log file. > > at

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
> > you run 'uname -X'? > > uname -X gives me "invalid option" on RHEL {4,5} and SLES {9,10}. which is what I would expect do you also need to supply a platform identity/type as an argument? > Post your config.log file. attached to previous relpy let me know if you need it re-sending k.mcma.

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Kevin McManus
> cat /etc/*release ->cat /etc/*release LSB_VERSION="core-2.0-noarch:core-3.0-noarch:core-2.0-x86_64:core-3.0-x86_64" SUSE LINUX 10.1 (X86-64) VERSION = 10.1 k.mcma...@gre.ac.uk - http://staffweb.cms.gre.ac.uk/~k.mcmanus -- Dr Kevin M

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Mon, Mar/30/2009 07:05:25PM, Kevin McManus wrote: > > > > I will try to reproduce the problem. > > > > I am not able to reproduce this with openmpi-1.3.2a1r20880.tar.gz. > > > > $ uname -a > > Linux ... 2.6.16.46-0.12-smp #1 SMP Thu May 17 14:00:09 UTC 2007 x86_64 > > x86_64 x86_64 GNU/L

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
> > I will try to reproduce the problem. > > I am not able to reproduce this with openmpi-1.3.2a1r20880.tar.gz. > > $ uname -a > Linux ... 2.6.16.46-0.12-smp #1 SMP Thu May 17 14:00:09 UTC 2007 x86_64 > x86_64 x86_64 GNU/Linux > $ cc -V > cc: Sun C 5.9 Linux_i386 Patch 124871-01 2007/07

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Terry Dontje
not Sun Studio specific. In order to answer my first question can you include the output of: cat /etc/*release thanks, --td thanks, --td Date: Mon, 30 Mar 2009 16:02:11 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudio configure problem To

Re: [OMPI users] Linux opteron infiniband sunstudio configure, problem

2009-03-30 Thread Terry Dontje
specific. thanks, --td Date: Mon, 30 Mar 2009 16:02:11 +0100 From: Kevin McManus Subject: Re: [OMPI users] Linux opteron infiniband sunstudioconfigure problem To: Open MPI Users Message-ID: <20090330150211.go13...@gre.ac.uk> Content-Type: text/plain; charset=us-ascii On Mon,

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 04:24:54PM +0100, John Hearns wrote: > 2009/3/30 Kevin McManus : > > > > > I can find psm libs at... > > > > /usr/lib/libpsm_infinipath.so.1.0 > > /usr/lib/libpsm_infinipath.so.1 > > /usr/lib64/libpsm_infinipath.so.1.0 > > /usr/lib64/libpsm_infinipath.so.1 > > > On x86_64

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 11:23:33AM -0400, Iain Bason wrote: > > On Mar 30, 2009, at 11:02 AM, Kevin McManus wrote: > > >configure: error: unrecognized option: --diable-mpi-threads > > Typo. That should be --disable-mpi-threads. oops silly me :-) argument accepted but still get MCA bucket prob

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Mon, Mar/30/2009 09:04:26AM, Ethan Mallove wrote: > On Thu, Mar/26/2009 04:52:28PM, Kevin McManus wrote: > > > > Hi All, > > > > As a complete beginner (to OpenMPI) I am attempting to build on > > a Linux opteron infiniband platform using SunStudio compilers. > > > > My build script looks lik

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread John Hearns
2009/3/30 Kevin McManus : > > > I can find psm libs at... > > /usr/lib/libpsm_infinipath.so.1.0 > /usr/lib/libpsm_infinipath.so.1 > /usr/lib64/libpsm_infinipath.so.1.0 > /usr/lib64/libpsm_infinipath.so.1 On x86_64 type systems /usr/lib64 are the 64 bit libraries, /usr/lib are the 32 bit ones

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Iain Bason
On Mar 30, 2009, at 11:02 AM, Kevin McManus wrote: configure: error: unrecognized option: --diable-mpi-threads Typo. That should be --disable-mpi-threads. Iain

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
On Mon, Mar 30, 2009 at 09:04:26AM -0500, Ethan Mallove wrote: > On Thu, Mar/26/2009 04:52:28PM, Kevin McManus wrote: > > > > Hi All, > > > > As a complete beginner (to OpenMPI) I am attempting to build on > > a Linux opteron infiniband platform using SunStudio compilers. > > > > My build script

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Ethan Mallove
On Thu, Mar/26/2009 04:52:28PM, Kevin McManus wrote: > > Hi All, > > As a complete beginner (to OpenMPI) I am attempting to build on > a Linux opteron infiniband platform using SunStudio compilers. > > My build script looks like... > > #!/bin/sh > > ../configure x86_64 \ > CC=cc CXX=CC

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Kevin McManus
> --td > >Message: 1 > >Date: Thu, 26 Mar 2009 16:52:28 + > >From: Kevin McManus > >Subject: [OMPI users] Linux opteron infiniband sunstudio configure > > problem > >To: us...@open-mpi.org > >Message-ID: <20090326165228.gc26...@gre.ac.uk> >

Re: [OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-30 Thread Terry Dontje
From: Kevin McManus Subject: [OMPI users] Linux opteron infiniband sunstudio configure problem To: us...@open-mpi.org Message-ID: <20090326165228.gc26...@gre.ac.uk> Content-Type: text/plain; charset=us-ascii Hi All, As a complete beginner (to OpenMPI) I am attempting to build

[OMPI users] Linux opteron infiniband sunstudio configure problem

2009-03-26 Thread Kevin McManus
Hi All, As a complete beginner (to OpenMPI) I am attempting to build on a Linux opteron infiniband platform using SunStudio compilers. My build script looks like... #!/bin/sh ../configure x86_64 \ CC=cc CXX=CC F77=f77 FC=f90 \ CFLAGS=-m64 CXXFLAGS=-m64 FFLAGS=-m64 FCFLAGS=-m64