On Sep 30, 2011, at 10:35 AM, Ed Blosch wrote:
> It IS the MPI application that is failing to link, not OpenMPI itself; my
> e-mail was not well written; sorry Brice.
>
> The situation is this: I am trying to compile using an OpenMPI 1.5.4 that
> was built to be rooted in /release, but it is not
We are using hwloc-1.2.2 for topology binding in Open Grid
Scheduler/Grid Engine 2011.11, and a user is encountering similar
issues:
http://gridengine.org/pipermail/users/2011-December/002126.html
In Open MPI, there is the configure switch "--without-libnuma" to turn
libnuma off. But since Open M
he -I but
did use it in the -L ?
-Original Message-
From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On
Behalf Of Jeff Squyres
Sent: Friday, September 30, 2011 7:04 AM
To: Open MPI Users
Subject: Re: [OMPI users] EXTERNAL: Re: Unresolved reference 'mbind'
I think the issue here is that it's linking the *MPI application* that is
causing the problem. Is that right?
If so, can you send your exact application compile line, and the the output of
that compile line with "--showme" at the end?
On Sep 29, 2011, at 4:24 PM, Brice Goglin wrote:
> Le 28/
On Sep 29, 2011, at 12:45 PM, Blosch, Edwin L wrote:
> If I add --without-hwloc in addition to --without-libnuma, then it builds.
> Is that a reasonable thing to do? Is there a better workaround? This
> 'hwloc' module looks like it might be important.
As a note of explanation: hwloc is effec
On Sep 28, 2011, at 5:02 PM, Blosch, Edwin L wrote:
> ./configure --prefix=/release/cfd/openmpi-intel --without-tm --without-sge
> --without-lsf --without-psm --without-portals --without-elan --without-slurm
> --without-loadleveler --without-libnuma --enable-mpirun-prefix-by-default
> --enable-
Le 28/09/2011 23:02, Blosch, Edwin L a écrit :
> Jeff,
>
> I've tried it now adding --without-libnuma. Actually that did NOT fix the
> problem, so I can send you the full output from configure if you want, to
> understand why this "hwloc" function is trying to use a function which
> appears t
eep using
them.
Thanks again,
Ed
-Original Message-
From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf
Of Blosch, Edwin L
Sent: Wednesday, September 28, 2011 4:02 PM
To: Open MPI Users
Subject: Re: [OMPI users] EXTERNAL: Re: Unresolved reference 'mbind' and
Jeff,
I've tried it now adding --without-libnuma. Actually that did NOT fix the
problem, so I can send you the full output from configure if you want, to
understand why this "hwloc" function is trying to use a function which appears
to be unavailable. The answers to some of your questions:
