Hmm, I didn't know that. Is OS X's small stack something that can be
alleviated with "ulimit" in bash? Right now, I have my ulimit set to
unlimited. Does this still work with OpenMPI? (I might be wrong, but
doesn't MPI work over TCP, such that new spawned processes on my host
wouldn't be affect
I figured. I've been using Ubuntu so long that I never expect any issues
with upgrades (until Unity came out..) From what I've read however, ar on
Lion seems to be a bit buggy (that seems to be the consistent complaint on
the MacPort support forums), but overall I have faith that it can work.
On
Ack, that's a very good point. I made sure to compile all my
other dependencies (NetCDF, IOAPI) with PGI, but I overlooked that one.
I'll admit that even after years of working with these models, I'm still
never sure when I can and can't mix binaries compiled with different
compilers. I used cer
The error message looks like it's no where near an MPI function; I would
guess that this is not an Open MPI problem but, particularly given your
statements about Snow Leopard) a CMAQ problem. The easiest way to debug
on OS X is to launch the application code in a debugger, something like:
mpiru
Also, please be aware that we haven't done any testing of OMPI on Lion, so this
is truly new ground.
On Aug 9, 2011, at 3:00 PM, Doug Reeder wrote:
> Matt,
>
> Are you sure you are building against your macports version of openmpi and
> not the one that ships w/ lion. In the trace back are it
Matt,
Are you sure you are building against your macports version of openmpi and not
the one that ships w/ lion. In the trace back are items 4-9, that end w/
x86_64pg from the pgi compiler. You said you are using pgf90 and pgcc but in
the configure input it looks like gcc is being used on lion.
Hi,
I'm trying to run CMAQ - an air quality model developed by the US EPA - on a
Mac (Lion) using OpenMPI (1.5.3) installed with MacPorts.
I am able to run CMAQ in parallel, and am able to run small programs that
use OpenMPI.
I set the OpenMPI environment variables to use pgf90/pgcc (10.9) as my
