hello all :
I run the following command :
/data1/cluster/openmpi/bin/mpirun -d -machinefile /tmp/nodes.10515.txt -np
3 /data1/cluster/mpiblast-pio-1.6/bin/mpiblast -p blastn -i
/data1/cluster/sequences/seq_4.txt -d Baculo_Nucleotide -o
/data1/cluster/blast.out/blast.out.
hello all :
I run the following command :
/data1/cluster/openmpi/bin/mpirun -d -machinefile /tmp/nodes.10515.txt -np
3 /data1/cluster/mpiblast-pio-1.6/bin/mpiblast -p blastn -i
/data1/cluster/sequences/seq_4.txt -d Baculo_Nucleotide -o
/data1/cluster/blast.out/blast.out.
hello all :
I run the following command :
/data1/cluster/openmpi/bin/mpirun -d -machinefile /tmp/nodes.10515.txt -np
3 /data1/cluster/mpiblast-pio-1.6/bin/mpiblast -p blastn -i
/data1/cluster/sequences/seq_4.txt -d Baculo_Nucleotide -o
/data1/cluster/blast.out/blast.out.
hello all :
I installed the openmpi-1.4.3 on redhat as the following step :
1. ./configure --prefix=/data1/cluster/openmpi
2. make
3. make install
And I compiled the examples of openmpi-1.4.3 as the following
step :
1. make
hello all ,
I submited the following Torque/pbs script.
#PBS -e /tmp/blast_19297.err
#PBS -o /tmp/blast.output
mpiexec -d -machinefile /tmp/nodes.19297.txt -np 3
/data1/bin/mpiblast -p tblastx -i /data1/cluster/sequences/seq_4.txt -d nt -o
/data1/cluster/blast.ou
