Re: [OMPI users] What is the default install library for PATH and LD_LIBRARY_PATH

2012-11-13 Thread Zbigniew Koza
./configure does not compile, but generates the Makefile. Did you run > make > make install after running ./configure? Notice also that openmpi can very likely be already installed on your system from ubuntu packages; anyway, I suggest you use ubuntu packages rather than compiling from sources un

Re: [OMPI users] what is a "node"?

2012-09-01 Thread Zbigniew Koza
x27;t find libnuma installed on your machine, so we > cannot bind memory allocations (but can bind processes). > > On Sep 1, 2012, at 3:41 AM, Zbigniew Koza wrote: > > Hi, > > I have one more question. > I wanted to experiment with processor affinity command-line optio

Re: [OMPI users] what is a "node"?

2012-09-01 Thread Zbigniew Koza
Hi, I have one more question. I wanted to experiment with processor affinity command-line options on my ubuntu PC. When I use OpenMPI compiled from sourecs a few weeks ago, mpirun returns error messages. However, the"official" OpenMPI installation on the same machine makes no problem. Does it mean

Re: [OMPI users] what is a "node"?

2012-08-30 Thread Zbigniew Koza
.29, 0.10, 0.03 >> 05:06:13 up 7 days, 6:57, 1 user, load average: 0.29, 0.10, 0.03 >> % >> - >> >> I bound each process to a single core, and mapped them on a round-robin >> basis by core. Hence, all 4 processes ended up on their own cores on a >> si

[OMPI users] what is a "node"?

2012-08-30 Thread Zbigniew Koza
Hi, consider this specification: "Curie fat consists in 360 nodes which contains 4 eight cores CPU Nehalem-EX clocked at 2.27 GHz, let 32 cores / node and 11520 cores for the full fat configuration" Suppose I would like to run some performance tests just on a single processor rather than 4

[OMPI users] RDMA GPUDirect CUDA...

2012-08-14 Thread Zbigniew Koza
Hi, I've just found this information on nVidia's plans regarding enhanced support for MPI in their CUDA toolkit: http://developer.nvidia.com/cuda/nvidia-gpudirect The idea that two GPUs can talk to each other via network cards without CPU as a middleman looks very promising. This technology

Re: [OMPI users] 1D and 2D arrays allocate memory by maloc() and MPI_Send and MPI_Recv problem.

2012-08-07 Thread Zbigniew Koza
Look at this declaration: int MPI_Send(void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) here*"count" is the**number of elements* (not bytes!) in the send buffer (nonnegative integer) Your "count" was defined as count = rows*matrix_size*sizeof (doub

Re: [OMPI users] bug in CUDA support for dual-processor systems?

2012-07-31 Thread Zbigniew Koza
ssible, and we were trying to avoid that requirement. I will submit a ticket against this and see if we can improve this. Rolf -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf Of Zbigniew Koza Sent: Tuesday, July 31, 2012 12:38 PM To:

[OMPI users] bug in CUDA support for dual-processor systems?

2012-07-31 Thread Zbigniew Koza
Hi, I wrote a simple program to see if OpenMPI can really handle cuda pointers as promised in the FAQ and how efficiently. The program (see below) breaks if MPI communication is to be performed between two devices that are on the same node but under different IOHs in a dual-processor Intel mac