Re: [OMPI users] undefined reference to `MPI::Comm::Comm()

2013-07-09 Thread Tomek Wlodarski
C wrapper compiler). > > > On Jul 9, 2013, at 9:41 AM, Tomek Wlodarski wrote: > >> I used mpicc but when I switched in Makefile to mpic++ it compiled >> without errors. >> Thanks a lot! >> Best, >> >> tomek >> >> On Tue, Jul 9, 2013 at 2:3

Re: [OMPI users] undefined reference to `MPI::Comm::Comm()

2013-07-09 Thread Tomek Wlodarski
> > Did you use mpic++ to build Gromacs? > > > On Jul 9, 2013, at 9:20 AM, Tomek Wlodarski wrote: > >> So I am running OpenMPi1.6.3 (config.log attached) >> And I would like to install gromacs patched with plumed (scientific >> computing). Both uses openmpi. &g

Re: [OMPI users] undefined reference to `MPI::Comm::Comm()

2013-07-09 Thread Tomek Wlodarski
So I am running OpenMPi1.6.3 (config.log attached) And I would like to install gromacs patched with plumed (scientific computing). Both uses openmpi. Gromacs alone compiles without errors (openMPI works). But when patched I got one mentioned before. I am sending config file for patched gromacs. If

[OMPI users] undefined reference to `MPI::Comm::Comm()

2013-07-09 Thread Tomek Wlodarski
Hi, I am trying to locally compile software which uses openmpi (1.6.3), but I got this error: restraint_camshift2.o:(.toc+0x98): undefined reference to `ompi_mpi_cxx_op_intercept' restraint_camshift2.o: In function `Intracomm': /home/users/didymos/openmpi-1.6.3/include/openmpi/ompi/mpi/cxx/intrac