Re: [OMPI users] Hyper-thread architecture effect on MPI jobs

2010-08-12 Thread Saygin Arkan
ts, and now it works fine. Thanks a lot, Saygin On Thu, Aug 12, 2010 at 11:39 AM, Saygin Arkan wrote: > Hi Gus, > > 1 - first of all, turning off hyper-threading is not an option. And it > gives pretty good results if I can find a way to arrange the cores. > > 2 - Actual

Re: [OMPI users] Hyper-thread architecture effect on MPI jobs

2010-08-12 Thread Saygin Arkan
e in our dual processor quad-core computers > (not hyperthreaded). > > Depending on your code, hyperthreading may not help performance anyway. > > I hope this helps, > Gus Correa > > Saygin Arkan wrote: > >> Hello, >> >> I'm running m

Re: [OMPI users] Hyper-thread architecture effect on MPI jobs

2010-08-12 Thread Saygin Arkan
pirun -host os221,os222,os223,os224,os228,os229 -np 18 --rankfile > myrankfile2 ./a.out > > which one reproduces your problem and which one avoids it depends on how > the BIOS numbers your HTs. Once you can confirm you understand the problem, > you (with the help of this list) can

[OMPI users] Hyper-thread architecture effect on MPI jobs

2010-08-11 Thread Saygin Arkan
Hello, I'm running mpi jobs in non-homogeneous cluster. 4 of my machines have the following properties, os221, os222, os223, os224: vendor_id : GenuineIntel cpu family : 6 model : 23 model name : Intel(R) Core(TM)2 Quad CPU Q9300 @ 2.50GHz stepping: 7 cache s

[OMPI users] Killing openmpi job via programming language

2010-07-14 Thread Saygin Arkan
Hi, I'm executing an mpi program, using C++ bindings. if( rank == 0) { ... ... if( !isFileFound){ LOG4CXX_ERROR(log, "There are not any files related with the given probe ID"); Finalize(); exit(0); } } Here rank zero stops working, I print the error log. But th

[OMPI users] Sending an objects vector via MPI C++

2010-07-07 Thread Saygin Arkan
Hello, I'm a newbie on MPI, just playing around with the things. I've searched through the internet but couldn't find an appropriate code example for my problem. I'm making comparisons, correlations on my cluster, and gaining the results like this: vector results; In every node, they calculate a