Re: [OMPI users] mpi.h file is missing in openmpi]

2010-03-25 Thread Romaric David
sun...@chem.iitb.ac.in a écrit : > Dear Users, > > Openmpi is installed in a Intel Xeon quad core 2.4Ghz machine loaded with > Red Hat Enterprise Linux 5. The loaded openmpi version is 1.2.5. While > trying to install CHARMM software, it asked for the path of mpi.h file and > library files libmpi.

Re: [OMPI users] About openmpi-mpirun

2009-12-17 Thread Romaric David
Min Zhu a écrit : Hi, I excuted bsub -e ERR -o OUT -n 16 openmpi-mpirun "/bin/sh -c ulimit -s unlimited; ./wrf.exe" Hello, Here we use : mpirun /bin/tcsh -c " limit stacksize unlimited ; /full/path/to/wrf.exe" Regards, R. David

Re: [OMPI users] About openmpi-mpirun

2009-12-17 Thread Romaric David
Min Zhu a écrit : Dear all, I have a question to ask you. If I issue a command "bsub -n 16 openmpi-mpirun ./wrf.exe" to my 128-core (16 nodes)cluster, the job failed to run due to stacksize problem. Openmpi-mpirun is a wrapper script written by Platform. If I want to add '/bin/sh -c ulimit -s

Re: [OMPI users] Gridengine + Open MPI

2008-07-10 Thread Romaric David
Hello, I just made a fix for the problem I've shown below in r18844. I think it is essentially the same problem that you are running into here. Please let me know if you still see the problem with the SGE tight integration job errors out. And I'll look at the suspend/resume feature later on

Re: [OMPI users] Gridengine + Open MPI

2008-07-07 Thread Romaric David
Pak Lui a écrit : It was fixed at one point in the trunk before v1.3 went official, but while rolling the code from gridengine PLM into the rsh PLM code, this feature was left out because there was some lingering issues that I didn't resolved and I lost track of it. Sorry but thanks for brin

[OMPI users] Gridengine + Open MPI

2008-07-06 Thread Romaric David
Hello, I'm trying to use Open MPI with Sun Grid Engine 6.1. With Open MPI 1.2.6 or 1.2.7, Open MPI processes are perfectly started or killed by Sun Grid Engine. Suspend does not work (looks like a know issue http://www.open-mpi.org/community/lists/users/2007/03/2790.php): Has this issue finally

[OMPI users] Maui + Slurm + OpenMPI

2008-05-22 Thread Romaric David
Hello, I am trying to make use of Maui 1.3.6p19 + Slurm 1.2.29 + OpenMPI 1.2.6 together. I am currently trying to have slurm procs --ntasks-per-node specification work with openmpi. I submit a simple mpirun job with : sbatch -N 2 --ntasks-per-node=1 myscript where myscript only contains an m