Re: [OMPI users] custom modules per job (PBS/OpenMPI/environment-modules)

2009-11-17 Thread Michael Sternberg
On Nov 17, 2009, at 10:17 , Michael Sternberg wrote: On Nov 17, 2009, at 9:10 , Ralph Castain wrote: Not exactly. It completely depends on how Torque was setup - OMPI isn't forwarding the environment. Torque is. I actually tried compiling OMPI with the tm interface a couple of ver

Re: [OMPI users] custom modules per job (PBS/OpenMPI/environment-modules)

2009-11-17 Thread Michael Sternberg
ironment to orted (after orted is >> launched) so orted can pass it on to MPI tasks. That should be portable >> between different launch mechanisms. But it looks like tm launches >> orted with the full mpirun environment (at the request of mpirun). >> >> Cheers, >

Re: [OMPI users] custom modules per job (PBS/OpenMPI/environment-modules)

2009-11-17 Thread Michael Sternberg
/sbin:/apps/amber/9/exe > _LMFILES_=/apps/Modules/modulefiles/openmpi/1.3.3:/apps/Modules/modulefiles/amber/9 > AMBERHOME=/apps/amber/9 > LOADEDMODULES=openmpi/1.3.3:amber/9 > PATH=/apps/openmpi/1.3.3/bin:/home/900/dbs900/bin:/bin:/usr/bin:/opt/bin:/usr/X11R6/bin:/opt/pbs/bin:/sbin:/usr/

[OMPI users] custom modules per job (PBS/OpenMPI/environment-modules)

2009-11-17 Thread Michael Sternberg
Dear readers, With OpenMPI, how would one go about requesting to load environment modules (of the http://modules.sourceforge.net/ kind) on remote nodes, augmenting those normally loaded there by shell dotfiles? Background: I run a RHEL-5/CentOS-5 cluster. I load a bunch of default modules t