Re: [OMPI users] defining different values for same environment variable

2009-02-27 Thread Matt Hughes
2009/2/27 Nicolas Deladerriere : > I am looking for a way to set environment variable with different value on > each node before running MPI executable. (not only export the environment > variable !) I typically use a script for things like this. So instead of specifying your executable directly

Re: [OMPI users] openib RETRY EXCEEDED ERROR

2009-02-27 Thread Matt Hughes
2009/2/26 Brett Pemberton : > [[1176,1],0][btl_openib_component.c:2905:handle_wc] from tango092.vpac.org > to: tango090 error polling LP CQ with status RETRY EXCEEDED ERROR status > number 12 for wr_id 38996224 opcode 0 qp_idx 0 What OS are you using? I've seen this error and many other Infiniban

Re: [OMPI users] Basic Scatter Operation

2008-12-09 Thread Matt Hughes
2008/12/9 Kevin Anthony Joy : > if (rank==0) { /// REMOVE THIS IF > MPI::COMM_WORLD.Scatter( > stat, > 1, > MPI::DOUBLE, > &test3, > 1, > MPI::DOUBLE, > 0); > } Hi Kevin. I see you are mixing C and C++ calls. It is probably bes

Re: [OMPI users] Need help resolving No route to host error with OpenMPI 1.1.2

2008-09-12 Thread Matt Hughes
Hi Prasanna, do you have any unusual ethernet interfaces on your nodes? I have seen similar problems when using IP over Infiniband. I'm not sure exactly why, but mixing interfaces of different types (ib0 and eth0 for example) can sometimes cause these problems, possibly because they are on differe

Re: [OMPI users] How to specify hosts for MPI_Comm_spawn

2008-07-29 Thread Matt Hughes
I've found that I always have to use mpirun to start my spawner process, due to the exact problem you are having: the need to give OMPI a hosts file! It seems the singleton functionality is lacking somehow... it won't allow you to spawn on arbitrary hosts. I have not tested if this is fixed in t

Re: [OMPI users] How can I start building apps in Open MPI? any docs?

2008-07-27 Thread Matt Hughes
For beginners, it is worth picking up some books. I have used Using MPI - 2nd Edition: Portable Parallel Programming with the Message Passing Interface by Gropp, Lusk, and Skjellum. The reference for MPI is available online at http://www.mpi-forum.org/docs/docs.html, but hard copies are nice to h

Re: [OMPI users] Beginner Problem with OpenMPI (MPI_Waitall)

2008-06-27 Thread Matt Hughes
2008/6/27 Joao Marcelo : > Hi, > > I'm starting to code with MPI and decided to use openmpi. I'm using > Ubuntu Linux with GCC version 4.2.3 and OpenMPI 1.2.5 (distribution > package). The output of "ompi_info -- all" is attached. I'm also > sending a copy of the source code I'm trying to run. On

Re: [OMPI users] OpenIB problem: error polling HP CQ...

2008-06-06 Thread Matt Hughes
ms to cause crashes in another library I use). I tried rebuilding, omitting --without-memory-manager, but it failed in the same way. mch > On May 29, 2008, at 3:50 AM, Matt Hughes wrote: > >> I have a program which uses MPI::Comm::Spawn to start processes on >> compute

[OMPI users] OpenIB problem: error polling HP CQ...

2008-05-29 Thread Matt Hughes
I have a program which uses MPI::Comm::Spawn to start processes on compute nodes (c0-0, c0-1, etc). The communication between the compute nodes consists of ISend and IRecv pairs, while communication between the compute nodes consists of gather and bcast operations. After executing ~80 successful l

[OMPI users] Infinite loop when tcp free list max reached

2008-05-26 Thread Matt Hughes
With the TCP btl, when free list items are exhausted, OMPI 1.2.6 falls into an infinite loop: #3981 0x002a98b4e23f in opal_condition_wait (c=0x2a98c541d0, m=0x2a98c54180) at ../../../../opal/threads/condition.h:81 #3982 0x002a98b4e0e9 in __ompi_free_list_wait (fl=0x2a98c540d0, item

[OMPI users] btl_openib_rd_{num, low} parameters? (Was Re: ConnectX hang with 1.2.5, crash with 1.3, during gather)

2008-04-04 Thread Matt Hughes
I was hanging problems with 1.2.5 hanging during collective operations (MPI_Gather and MPI_Barrier): 2008/3/27 Matt Hughes : > A similar problem was reported in this message, and a 1.3 nightly was > reported to work: > http://www.open-mpi.org/community/lists/users/2008/01/4891.p

Re: [OMPI users] Spawn problem

2008-03-31 Thread Matt Hughes
On 30/03/2008, Joao Vicente Lima wrote: > Hi, > sorry bring this again ... but i hope use spawn in ompi someday :-D I believe it's crashing in MPI_Finalize because you have not closed all communication paths between the parent and the child processes. For the parent process, try calling MPI_Comm

[OMPI users] ConnectX hang with 1.2.5, crash with 1.3, during gather

2008-03-27 Thread Matt Hughes
uggest where I can go from here? Thanks, Matt Hughes ompi-info.tar.gz Description: GNU Zip compressed data