[OMPI users] [PATCH] hooks: disable malloc override inside of Gentoo sandbox

2013-07-01 Thread Justin Bronder
ng for SANDBOX_PID. +*/ + if (getenv("FAKEROOTKEY") != NULL || -getenv("FAKED_MODE") != NULL) { +getenv("FAKED_MODE") != NULL || +getenv("SANDBOX_PID") != NULL ) { return; } -- 1.8.1.5 -- Justin Bronder signature.asc Description: Digital signature

Re: [OMPI users] Wrappers should put include path *after* user args

2010-01-19 Thread Justin Bronder
sr/lib64/mpi/mpi-mpich2/usr/include OpenMPI: jbronder@mejis ~ $ which mpicc /usr/lib64/mpi/mpi-openmpi/usr/bin/mpicc jbronder@mejis ~ $ mpicc -showme:compile -I/bleh -I/usr/lib64/mpi/mpi-openmpi/usr/include/openmpi -pthread -I/bleh Thanks, -- Justin Bronder pgpUpu5h4BdhJ.pgp Description: PGP signature

Re: [OMPI users] Open-MPI 1.2 and GM

2007-03-27 Thread Justin Bronder
d one don't allow intra-node > communications or self. The correct mpirun command line should be: > > mpirun -np 4 --mca btl gm,self ... > -- Justin Bronder Advanced Computing Research Lab University of Maine, Orono 20 Godfrey Dr Orono, ME 04473 www.clusters.umaine.edu

[OMPI users] Open-MPI 1.2 and GM

2007-03-27 Thread Justin Bronder
owing fails: /usr/local/ompi-gnu/bin/mpirun -np 4 -mca btl gm --host node84,node83 ./xhpl I've attached gziped files as suggested on the "Getting Help" section of the website and the output from the failed mpirun. Both nodes are known good Myrinet nodes, using FMA to map. T

Re: [OMPI users] how do i link to .la library files?

2006-10-27 Thread Justin Bronder
To take care of the runtime errors you just need to do the following in a bash shell. $ export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/lib If you used "./configure --prefix=/some/other/prefix", then replace "/usr/local/lib" with "/some/other/prefix/lib". If you just add this to your .bashrc

Re: [OMPI users] problem abut openmpi running

2006-10-19 Thread Justin Bronder
On a number of my Linux machines, /usr/local/lib is not searched by ldconfig, and hence, is not going to be found by gcc. You can fix this by adding /usr/local/lib to /etc/ld.so.conf and running ldconfig ( add the -v flag if you want to see the output ). -Justin. On 10/19/06, Durga Choudhury w

Re: [OMPI users] Problem with Openmpi 1.1

2006-07-08 Thread Justin Bronder
ever)? > > Let us know what you find. Thanks! > > > > *From:* users-boun...@open-mpi.org > [mailto:users-boun...@open-mpi.org] *On Behalf Of *Justin Bronder > *Sent:* Thursday, July 06, 2006 3:16 PM >

Re: [OMPI users] Problem with Openmpi 1.1

2006-07-06 Thread Justin Bronder
yrinet (GM)? If so, I'd love to hear the configure arguments and various versions you are using. Bonus points if you are using the IBM XL compilers. Thanks, Justin. On 7/6/06, Justin Bronder wrote: Yes, that output was actually cut and pasted from an OS X run. I'm about to test a

Re: [OMPI users] Problem with Openmpi 1.1

2006-07-06 Thread Justin Bronder
Yes, that output was actually cut and pasted from an OS X run. I'm about to test against 1.0.3a1r10670. Justin. On 7/6/06, Galen M. Shipman wrote: Justin, Is the OS X run showing the same residual failure? - Galen On Jul 6, 2006, at 10:49 AM, Justin Bronder wrote: Disregard the fa

Re: [OMPI users] Problem with Openmpi 1.1

2006-07-06 Thread Justin Bronder
Disregard the failure on Linux, a rebuild from scratch of HPL and OpenMPI seems to have resolved the issue. At least I'm not getting the errors during the residual checks. However, this is persisting under OS X. Thanks, Justin. On 7/6/06, Justin Bronder wrote: For OS X: /usr/local/om

Re: [OMPI users] Problem with Openmpi 1.1

2006-07-06 Thread Justin Bronder
parameters (if any), these could be in a config file, environment variables or on the command line. Thanks, Galen On Jul 6, 2006, at 9:22 AM, Justin Bronder wrote: As far as the nightly builds go, I'm still seeing what I believe to be this problem in both r10670 and r10652. This is happ

Re: [OMPI users] Problem with Openmpi 1.1

2006-07-06 Thread Justin Bronder
As far as the nightly builds go, I'm still seeing what I believe to be this problem in both r10670 and r10652. This is happening with both Linux and OS X. Below are the systems and ompi_info for the newest revision 10670. As an example of the error, when running HPL with Myrinet I get the follo

Re: [OMPI users] OpenMpi 1.1 and Torque 2.1.1

2006-06-30 Thread Justin Bronder
know. Thanks, Justin Bronder. On 6/30/06, Jeff Squyres (jsquyres) wrote: There was a bug in early Torque 2.1.x versions (I'm afraid I don't remember which one) that -- I think -- had something to do with a faulty poll() implementation. Whatever the problem was, it caused all TM la

[OMPI users] OpenMpi 1.1 and Torque 2.1.1

2006-06-29 Thread Justin Bronder
o=-13 node96:/usr/src/openmpi-1.1 jbronder$ My thanks for any help in advance, Justin Bronder. ompi_info.log.gz Description: GNU Zip compressed data

Re: [OMPI users] [PMX:VIRUS] Re: OpenMPI 1.0.3a1r10002 Fails to build with IBM XL Compilers.

2006-05-31 Thread Justin Bronder
On 5/31/06, Brian W. Barrett wrote: A quick workaround is to edit opal/include/opal_config.h and change the #defines for OMPI_CXX_GCC_INLINE_ASSEMBLY and OMPI_CC_GCC_INLINE_ASSEMBLY from 1 to 0. That should allow you to build Open MPI with those XL compilers. Hopefully IBM will fix this in a

Re: [OMPI users] [PMX:VIRUS] Re: OpenMPI 1.0.3a1r10002 Fails to build with IBM XL Compilers.

2006-05-31 Thread Justin Bronder
On 5/30/06, Brian Barrett wrote: On May 28, 2006, at 8:48 AM, Justin Bronder wrote: > Brian Barrett wrote: >> On May 27, 2006, at 10:01 AM, Justin Bronder wrote: >> >> >>> I've attached the required logs. Essentially the problem seems to >>>

[OMPI users] [PMX:VIRUS] Re: OpenMPI 1.0.3a1r10002 Fails to build with IBM XL Compilers.

2006-05-28 Thread Justin Bronder
Brian Barrett wrote: > On May 27, 2006, at 10:01 AM, Justin Bronder wrote: > > >> I've attached the required logs. Essentially the problem seems to >> be that the XL Compilers fail to recognize "__asm__ __volatile__" in >> opal/include/sys/powerpc

[OMPI users] OpenMPI 1.0.3a1r10002 Fails to build with IBM XL Compilers.

2006-05-27 Thread Justin Bronder
o 3.4.6-r1, ssp-3.4.5-1.0, pie-8.7.9) Thanks, -- Justin Bronder University of Maine, Orono Advanced Computing Research Lab 20 Godfrey Dr Orono, ME 04473 www.clusters.umaine.edu Mathematics Department 425 Neville Hall Orono, ME 04469 ompi-build.tar.gz Description: application/gzip