Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-29 Thread Hugh Dickinson
ng time since I looked though). On Apr 28, 2009, at 4:57 PM, Hugh Dickinson wrote: As far as I can tell, both the PATH and LD_LIBRARY_PATH are set correctly. I've tried with the full path to the mpirun executable and using the --prefix command line option. Neither works. The d

Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
your mpirun cmd line: -mca btl tcp,selfThat will cause OMPI to ignore the Infiniband subsystem and attempt to run via TCP over any available Ethernet.On Tue, Apr 28, 2009 at 12:16 PM, Hugh Dickinson <h.j.dickin...@durham.ac.uk> wrote: Many thanks for your help nonetheless. Hugh On 28 Apr 2009, a

Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
our mpirun cmd line: -mca btl tcp,self That will cause OMPI to ignore the Infiniband subsystem and attempt to run via TCP over any available Ethernet. On Tue, Apr 28, 2009 at 12:16 PM, Hugh Dickinson > wrote: Many thanks for your help nonetheless. Hugh On 28 Apr 2009, at 17:23, jody wr

Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
ue, Apr 28, 2009 at 5:52 PM, Hugh Dickinson wrote: Hi again, I tried a simple mpi c++ program: -- #include #include using namespace MPI; using namespace std; int main(int argc, char* argv[]) { int rank,size; Init(argc,argv); rank=COMM_WORLD.Get_rank(); size=COMM_WORLD.Get_size();

Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
rt will be used instead, although this may result in lower performance. -- -- However, as before the program does work in this special case, and I get: -- P:0 out of 2 P:1 out of 2 -- Do these errors indicate a problem with the Open MPI installation? H

Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
u tried mpirun -np 2 --host nodename1,nodename2 uptime (i.e. not using the host file) Jody On Tue, Apr 28, 2009 at 4:37 PM, Hugh Dickinson wrote: Hi Jody, The node names are exactly the same. I wanted to avoid updating the version because I'm not the system administrator, and it could

Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
t think your OPen-MPI version is the cause of your trouble, but there have been quite some changes since v1.2.5 Jody On Tue, Apr 28, 2009 at 3:22 PM, Hugh Dickinson wrote: Hi Jody, Indeed, all the nodes are running the same version of Open MPI. Perhaps I was incorrect to describe the cluster

Re: [OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
Hi Jody,Indeed, all the nodes are running the same version of Open MPI. Perhaps I was incorrect to describe the cluster as heterogeneous. In fact, all the nodes run the same operating system (Scientific Linux 5.2), it's only the hardware that's different and even then they're all i386 or i686. I'm

[OMPI users] ORTE_ERROR_LOG: Timeout in file

2009-04-28 Thread Hugh Dickinson
Hi all, First of all let me make it perfectly clear that I'm a complete beginner as far as MPI is concerned, so this may well be a trivial problem! I've tried to set up Open MPI to use SSH to communicate between nodes on a heterogeneous cluster. I've set up passwordless SSH and it seems