Re: [OMPI users] memory leak in alltoallw

2008-08-18 Thread Dave Grote
that this should not a problem anymore. Commit 19314 fix this for the trunk, while commit 19315 fix it for the upcoming 1.3. Thanks again for your report. george. On Aug 7, 2008, at 1:21 AM, Dave Grote wrote: Hi, I've been enhancing my code and have started using the ni

[OMPI users] memory leak in alltoallw

2008-08-06 Thread Dave Grote
Hi, I've been enhancing my code and have started using the nice routine alltoallw. The code works fine except that there seems to be a memory leak in alltoallw. I've eliminated all other possible causes and have reduced the code down to a bare minimum. I've included fortran source code which

Re: [OMPI users] Problem with X forwarding

2008-06-09 Thread Dave Grote
I have this same issue from a while ago. Search for "x11 forwarding" in the archives. The solution I settled on is to use the -d option, the debug option. With this option, mpirun will keep the ssh sessions open, and so the X forwarding stays active. Note that you do get lots of debugging out

Re: [OMPI users] More on AlltoAll

2008-03-20 Thread Dave Grote
Sorry - my mistake - I meant AlltoAllV, which is what I use in my code. Ashley Pittman wrote: On Thu, 2008-03-20 at 10:27 -0700, Dave Grote wrote: After reading the previous discussion on AllReduce and AlltoAll, I thought I would ask my question. I have a case where I have data

[OMPI users] More on AlltoAll

2008-03-20 Thread Dave Grote
After reading the previous discussion on AllReduce and AlltoAll, I thought I would ask my question. I have a case where I have data unevenly distributed among the processes (unevenly means that the processes have differing amounts of data) that I need to globally redistribute, resulting in a

Re: [OMPI users] x11 forwarding

2006-12-04 Thread Dave Grote
ly suggest doing so until we get back to that area. Just my $0.02. Ralph On 12/1/06 4:51 PM, "Dave Grote" wrote: Is there a place where I can hack the openmpi code to force it to keep the ssh sessions open without the -d option? I looked through some of the code, inclu

Re: [OMPI users] x11 forwarding

2006-12-01 Thread Dave Grote
lting xterm and have them echo'd back correctly.  - Galen    On Dec 1, 2006, at 11:48 AM, Dave Grote wrote: Thanks for the suggestion, but it doesn't fix my problem. I did the same thing you did and was able to get xterms open when using the -d option. But when I

Re: [OMPI users] x11 forwarding

2006-12-01 Thread Dave Grote
able to type characters in the resulting xterm and have them echo'd back correctly.  - Galen    On Dec 1, 2006, at 11:48 AM, Dave Grote wrote: Thanks for the suggestion, but it doesn't fix my problem. I did the same thing you did and was able to get xterms open whe

Re: [OMPI users] x11 forwarding

2006-12-01 Thread Dave Grote
Have you tried adding "-d"? Thanks,  Galen  On Nov 30, 2006, at 2:42 PM, Dave Grote wrote: I don't think that that is the problem. As far as I can tell, the DISPLAY environment variable is being set properly on the

Re: [OMPI users] x11 forwarding

2006-11-30 Thread Dave Grote
reate the problem you are seeing. I’ll have to chat with folks here to understand what part of the environment we absolutely need to carry forward, and what parts we need to “cleanse” before passing it along. Ralph On 11/30/06 10:50 AM, "Dave Grote" wrote: I

Re: [OMPI users] x11 forwarding

2006-11-30 Thread Dave Grote
issue with the X server (xorg) or with the version of linux, so I am also seeking help from the person who maintains caos linux. If it matters, the machine uses myrinet for the interconnects.   Thanks! Dave Galen Shipman wrote: what does your command line look like? - Galen On Nov 29,

[OMPI users] x11 forwarding

2006-11-29 Thread Dave Grote
I cannot get X11 forwarding to work using mpirun. I've tried all of the standard methods, such as setting pls_rsh_agent = ssh -X, using xhost, and a few other things, but nothing works in general. In the FAQ, http://www.open-mpi.org/faq/?category=running#mpirun-gui, a reference is made to oth

[OMPI users] allreduce produces "error(8) registering gm memory"

2006-08-21 Thread Dave Grote
I have attached a small program that when run on my machine produces the error message below and locks up. [node:06319] [mpool_gm_module.c:100] error(8) registering gm memory I get the error when I run with 32 processors, but not with 4 (even if I increase the loop count to 2). This