>From a quick look at the documentation, the Maker tool use mpich2
http://gmod.org/wiki/MAKER_Tutorial#Prerequisites
Should you not install mpich on your cluster?
.
Are you trying to use MPI to run multiple copies of the Maker tool?
You would probably be better using SLurm srun or an array job
ht
Thomas,
The post you are referencing suggests to run
mpiexec -mca btl ^openib -n 40 maker -help
but you are running
mpiexec -mca btl ^openib -N 5 gcc --version
which will run 5 instances of GCC. The out put you're seeing is totally
to be expected.
I don't think anyone here can help you wit
Thomas,
I think OpenMP is installed correctly. This
$ mpiexec -mca btl ^openib -N 5 gcc --version
asks OpenMPI to run `gcc --version` once for each processor assigned to the
job, so if you did NOT get 5 sets of output, it would be incorrect.
>From your error error message, it looks to me as th
Hello
We are trying to run maker(http://www.yandell-lab.org/software/maker.html) in
combination with OpenMPI
But when we are trying to submit a job with the maker and openmpi,
We see the following error in the log file:
--Next Contig--
#---
