Re: [OMPI users] mpirun on Kubuntu 20.4.1 hangs

2020-11-14 Thread Brice Goglin via users
Hello The hwloc/X11 stuff is caused by OpenMPI using a hwloc that was built with the GL backend enabled (in your case, it's because package libhwloc-plugins is installed). That backend is used for querying the locality of X11 displays running on NVIDIA GPUs (using libxnvctrl). Does running "lstopo

Re: [OMPI users] PRRTE DVM: how to tell prun to not share nodes among prun jobs?

2020-11-14 Thread Ralph Castain via users
That would be very kind of you and most welcome! > On Nov 14, 2020, at 12:38 PM, Alexei Colin wrote: > > On Sat, Nov 14, 2020 at 08:07:47PM +, Ralph Castain via users wrote: >> IIRC, the correct syntax is: >> >> prun -host +e ... >> >> This tells PRRTE that you want empty nodes for this ap

Re: [OMPI users] PRRTE DVM: how to tell prun to not share nodes among prun jobs?

2020-11-14 Thread Alexei Colin via users
On Sat, Nov 14, 2020 at 08:07:47PM +, Ralph Castain via users wrote: > IIRC, the correct syntax is: > > prun -host +e ... > > This tells PRRTE that you want empty nodes for this application. You can even > specify how many empty nodes you want: > > prun -host +e:2 ... > > I haven't tested

Re: [OMPI users] PRRTE DVM: how to tell prun to not share nodes among prun jobs?

2020-11-14 Thread Ralph Castain via users
IIRC, the correct syntax is: prun -host +e ... This tells PRRTE that you want empty nodes for this application. You can even specify how many empty nodes you want: prun -host +e:2 ... I haven't tested that in a bit, so please let us know if it works or not so we can fix it if necessary. As f

[OMPI users] PRRTE DVM: how to tell prun to not share nodes among prun jobs?

2020-11-14 Thread Alexei Colin via users
Hi, in context of the PRRTE Distributed Virtual Machine, is there a way to tell the task mapper inside prun to not share a node across separate prun jobs? For example, inside a resource allocation from Cobalt/ALPS: 2 nodes with 64 cores each: prte --daemonize prun ... & ... prun ... & pterm Scen

Re: [OMPI users] mpirun on Kubuntu 20.4.1 hangs

2020-11-14 Thread Jorge Silva via users
Sorry, if  I  execute mpirun in a *really *bare terminal, without X Server running it works! but with an error message : Invalid MIT-MAGIC-COOKIE-1 key So the problem is related to X, but I have still no solution Jorge Le 14/11/2020 à 12:33, Jorge Silva via users a écrit : Hello, In spite

Re: [OMPI users] mpirun on Kubuntu 20.4.1 hangs

2020-11-14 Thread Jorge Silva via users
Hello, In spite of the delay, I was not able to solve my problem. Thanks to Joseph and Prentice for their interesting suggestions. I uninstalled AppAmor (SElinux is not installed ) as suggested by Prentice but there were no changes, mpirun  sttill hangs. The result of gdb stack trace is the