Re: [OMPI users] [EXTERNAL] Shmem errors on Mac OS Catalina

2020-02-06 Thread Ralph Castain via users
It is also wise to create a "tmp" directory under your home directory, and reset TMPDIR to point there. Avoiding use of the system tmpdir is highly advisable under Mac OS, especially Catalina. On Feb 6, 2020, at 4:09 PM, Gutierrez, Samuel K. via users mailto:users@lists.open-mpi.org> > wrote:

Re: [OMPI users] [EXTERNAL] Shmem errors on Mac OS Catalina

2020-02-06 Thread Gutierrez, Samuel K. via users
Good afternoon, I fear that files created with shm_open(), a call used in the posix shmem component, are not being cleaned up properly. To test this theory, can you please reboot your computer and try again? Rebooting should remove any temporary files created with shm_open(). Sam On Feb 6, 20

Re: [OMPI users] Trouble with Mellanox's hcoll component and MPI_THREAD_MULTIPLE support?

2020-02-06 Thread Angel de Vicente via users
Hi, Joshua Ladd writes: > This is an ancient version of HCOLL. Please upgrade to the latest > version (you can do this by installing HPC-X > https://www.mellanox.com/products/hpc-x-toolkit) Just to close the circle and inform that all seems OK now. I don't have root permission in this machine

[OMPI users] Shmem errors on Mac OS Catalina

2020-02-06 Thread Jin Tao via users
Hi, I am running Open MPI on Mac OS Catalina and am running into an issue. - I installed Open MPI and everything seemed to be working fine until a few hours ago. - I make and run with the terminal command: * make && mpiexec --mca shmem posix --oversubscribe -np 8 main.out* - When I do this, I

Re: [OMPI users] running mpirun with grid

2020-02-06 Thread Kulshrestha, Vipul via users
Hi Reuti, Thanks for direction. I have never worked with grid submission scripts, so it will take me a while to learn and then try this out. I will get back as I am able to make progress. Regards, Vipul -Original Message- From: Reuti [mailto:re...@staff.uni-marburg.de] Sent: Thurs

Re: [OMPI users] running mpirun with grid

2020-02-06 Thread Reuti via users
Hi, > Am 06.02.2020 um 21:47 schrieb Kulshrestha, Vipul via users > : > > Hi, > > I need to launch my openmpi application on grid. > > My application is designed to run N processes, where each process would have > M threads. > > To run it without grid, I run it as (say N = 7, M = 2) > % m

[OMPI users] running mpirun with grid

2020-02-06 Thread Kulshrestha, Vipul via users
Hi, I need to launch my openmpi application on grid. My application is designed to run N processes, where each process would have M threads. To run it without grid, I run it as (say N = 7, M = 2) % mpirun -np 7 The above works well and runs N processes. I am also able to submit it on grid us