Re: [OMPI users] "undefined reference to `MPI_Comm_create_group'" error message when using Open MPI 1.6.2

2017-06-08 Thread Jeff Hammond
"I can't upgrade Open MPI on the computing nodes of this system" is false. Open-MPI can be installed entirely in userspace in your home directory. If you read the MPI_Comm_create_group paper, there should be instructions on how to implement this using MPI-2 features. Jim Dinan wrote a working vers

Re: [OMPI users] "undefined reference to `MPI_Comm_create_group'" error message when using Open MPI 1.6.2

2017-06-08 Thread Nathan Hjelm
MPI_Comm_create_groups is an MPI-3.0+ function. 1.6.x is MPI-2.1. You can use the macros MPI_VERSION and MPI_SUBVERSION to check the MPI version. You will have to modify your code if you want it to work with older versions of Open MPI. -Nathan On Jun 08, 2017, at 03:59 AM, Arham Amouie via us

[OMPI users] Node failure handling

2017-06-08 Thread Tim Burgess
Hi! So I know from searching the archive that this is a repeated topic of discussion here, and apologies for that, but since it's been a year or so I thought I'd double-check whether anything has changed before really starting to tear my hair out too much. Is there a combination of MCA parameters

Re: [OMPI users] "undefined reference to `MPI_Comm_create_group'" error message when using Open MPI 1.6.2

2017-06-08 Thread Gilles Gouaillardet
MPI_Comm_create_group was not available in Open MPI v1.6. so unless you are willing to create your own subroutine in your application, you'd rather upgrade to Open MPI v2 i recomment you configure Open MPI with --disable-dlopen --prefix= unless you plan to scale on thousands of nodes, you should

[OMPI users] "undefined reference to `MPI_Comm_create_group'" error message when using Open MPI 1.6.2

2017-06-08 Thread Arham Amouie via users
Hello. Open MPI 1.6.2 is installed on the cluster I'm using. At the moment I can't upgrade Open MPI on the computing nodes of this system. My C code contains many calls to MPI functions. When I try to 'make' this code on the cluster, the only error that I get is "undefined reference to `MPI_Com