[OMPI users] OpenMPI installation issue or mpi4py compatibility problem

2017-05-17 Thread Tim Jim
Hello, I have been having some issues with trying to get OpenMPI working with mpi4py. I've tried to break down my troubleshooting into a few chunks below, and I believe that there are a few, distinct issues that need solving. Following some troubleshooting in the following link: https://bitbucket

Re: [OMPI users] MPI_Win_allocate: Memory alignment

2017-05-17 Thread Joseph Schuchart
Gilles, all, I can confirm that the fix has landed in OpenMPI 2.1.1. Unfortunately, 1.10.7 still provides 4-Byte-aligned memory. Will this be fixed in the 1.x branch at some point? We are selectively enabling the use of shared memory windows when using OpenMPI so it would be interesting to kno

Re: [OMPI users] MPI_Init() failure

2017-05-17 Thread Gilles Gouaillardet
Folks, for the records, this was investigated off-list - the root cause was bad permissions on the /.../lib/openmpi directory (no components could be found) - then it was found tm support was not built-in, so mpirun did not behave as expected under torque/pbs Cheers, Gilles On 5/15/2