Re: [OMPI users] segmentation fault with java MPI

2016-01-24 Thread Gilles Gouaillardet
Marko, i wrote a test program based on your code snippet and it works for me. could you please : - post a standalone test case that is ready to be compiled and ran - which version of OpenMPI are you using ? - which JVM are you using ? (vendor and version) - post your full command line Cheers,

[OMPI users] segmentation fault with java MPI

2016-01-24 Thread Marko Blatzheim
Hi, I want to load a saved object using java mpi. Without MPI there is no problem in reading the file and casting it to the correct type. I tried to open the file as a byte array and convert this to an object. I checked that all bytes are read correctly. Here I have an example where the saved

Re: [OMPI users] Raspberry Pi 2 Beowulf Cluster for OpenFOAM

2016-01-24 Thread Steve O'Hara
Hi Gilles, Yes that’s correct – one node with 3 cores is about 1.5 minutes for a 10 second simulation, this turns into 4 minutes when I send the job to 36 cores on 9 IP connected nodes. I haven’t setup an x86 cluster to do a comparison, I know this would be a lot easier than setting up the Pis

Re: [OMPI users] Raspberry Pi 2 Beowulf Cluster for OpenFOAM

2016-01-24 Thread Steve O'Hara
Hi, Yes I did, in fact the master node is an NFS server and the other 9 nodes auto-mount it on startup. The NFS partition on the master is also a RAMdisk. The initial method was to create the OpenFOAM case in the NFS partition and then just point the nodes at it using wdir on the mpirun command

Re: [OMPI users] how to benchmark a server with openmpi?

2016-01-24 Thread Saliya Ekanayake
The code for the paper with details is in GitHub https://github.com/DSC-SPIDAL/damds On Sun, Jan 24, 2016 at 2:51 PM, Ibrahim Ikhlawi wrote: > Thanks for reply. > > But I want to have an imagination about the behaviour of my server. > Therefore I need an Code which I can run it on my server. > C

Re: [OMPI users] how to benchmark a server with openmpi?

2016-01-24 Thread Ibrahim Ikhlawi
Thanks for reply. But I want to have an imagination about the behaviour of my server. Therefore I need an Code which I can run it on my server. Could anyone give me an example for any code? My last code was a simple example and not enough to get an imagination. Thanx in advance List-Post: users

Re: [OMPI users] how to benchmark a server with openmpi?

2016-01-24 Thread Saliya Ekanayake
We've looked at performance in detail with regard to OpenMPI Java for large scale real data analytics. Here's a paper still in submission that identifies 5 rules you'd find useful to get good performance. It talks about how the number of processes affect performance as well. Tests were done up 3072

Re: [OMPI users] how to benchmark a server with openmpi?

2016-01-24 Thread Nick Papior
*All* codes scale differently. So you should do these tests with your own code, and not a different code (such as MM). 2016-01-24 15:38 GMT+01:00 Ibrahim Ikhlawi : > > > Hallo, > > I am working on a server and run java codes with OpenMPI. I want to know > which number of process is the fastest t

[OMPI users] how to benchmark a server with openmpi?

2016-01-24 Thread Ibrahim Ikhlawi
Hallo, I am working on a server and run java codes with OpenMPI. I want to know which number of process is the fastest to run my code with? For this reason I wrote a code that multiply two matrices but the differences between the results is not significant. Therefore I want to know how can I

Re: [OMPI users] Raspberry Pi 2 Beowulf Cluster for OpenFOAM

2016-01-24 Thread Gilles Gouaillardet
Steve, if I understand correctly, running on one node with 4 MPI tasks is three times faster than running on 10 nodes with 40 (10 ?) tasks. did you try this test on a x86 cluster and with tcp interconnect, and did you get better performance when increasing the number of nodes ? can you try to ru

Re: [OMPI users] Raspberry Pi 2 Beowulf Cluster for OpenFOAM

2016-01-24 Thread John Hearns
Hi Steve. Regarding Step 3, have you thought of using some shared storage? NFS shared drive perhaps, or there are many alternatives! On 23 January 2016 at 20:47, Steve O'Hara wrote: > Hi, > > > > I’m afraid I’m pretty new to both OpenFOAM and openMPI so please excuse me > if my questions are eit