Re: [OMPI users] Open MPI not using parameters passed from PBS scheduler

2015-12-03 Thread Ralph Castain
Check to ensure that OMPI was built with the required support - if you run ompi_info, do you see an output line that indicates the RAS tm module was built? If not, then that is the problem. > On Dec 3, 2015, at 10:36 AM, Gregory Cary wrote: > > Hello, > > I'm having difficulty running mpiblas

Re: [OMPI users] Bug in Fortran-module MPI of OpenMPI 1.10.0 with Intel-Ftn-compiler

2015-12-03 Thread Jeff Squyres (jsquyres)
On Nov 23, 2015, at 11:07 AM, michael.rach...@dlr.de wrote: > > In the meantime the administrators have installed (Thanks!) OpenMPI-1.10.1 > with Intel-16.0.0 on the cluster. > I have tested it with our code: It works. > The time spent for MPI-data transmission was the same as with > OpenMPI-1

[OMPI users] Open MPI not using parameters passed from PBS scheduler

2015-12-03 Thread Gregory Cary
Hello, I'm having difficulty running mpiblast using the code pasted below. The goal is to run the blast search in parallel on 3 different nodes (2 processors, 8 CPU cores, and 24 GB RAM per node). Whenever I run mpiexec without the -n parameter I get the error message: "Sorry, mpiBLAST must be