Re: [OMPI users] mpirun/mpiexec requires su

2015-10-15 Thread Brant Abbott
Many thanks for the input. When I look for mpirun: brant.abbott@rust:~$ whereis mpirun mpirun: /usr/bin/mpirun.openmpi /usr/bin/mpirun /usr/bin/X11/mpirun.openmpi /usr/bin/X11/mpirun /usr/share/man/man1/mpirun.1.gz If I use mpirun.openmpi every

Re: [OMPI users] IMB-MPI1 stuck at MPI_Finalize with OpenMPI 1.10.0

2015-10-15 Thread Jeff Squyres (jsquyres)
Ralph is our runtime guy; he can provide the definitive answers here. But first, can you try the latest v1.10.1 nightly snapshot tarball? Some fixes have gone in since v1.10.0 has been released: http://www.open-mpi.org/nightly/v1.10/ > On Oct 15, 2015, at 1:13 PM, Zhi Zhang wrote: > > H

Re: [OMPI users] mpirun/mpiexec requires su

2015-10-15 Thread Jeff Squyres (jsquyres)
I think you're accidentally using MPICH, not Open MPI. Specifically, those are error messages from MPICH. Check your paths to ensure that mpif90 / mpirun / etc. are all the ones that you think you're executing. And then double check your LD_LIBRARY_PATH to ensure that libmpi is the library th

Re: [OMPI users] mpirun/mpiexec requires su

2015-10-15 Thread Surivinta Surivinta
You install openmpi as root, and run executable with perm of root on user. Don't you think something wrong? (hint: when you root mpirun work) Try install openmpi for user. Also, you use ubuntu - binary based distro, you can use apt-get to install openmpi: sudo apt-get install libopenmpi-dev openmp

[OMPI users] mpirun/mpiexec requires su

2015-10-15 Thread Brant Abbott
Hi, I've installed openmpi on a workstation running Ubuntu 14.04.3 LTS. Logged in as root I can compile using mpif90 and run the programs using mpirun. Logged in as a regular user I can compile using mpif90, but cannot run the programs using mpirun (or mpiexec). The error messages are: brant.abb

[OMPI users] IMB-MPI1 stuck at MPI_Finalize with OpenMPI 1.10.0

2015-10-15 Thread Zhi Zhang
Hi, When running the Intel MPI Benchmark (versions 3.2.3 and 4.1.0.109 were tried), running all benchmarks, and looping the test over and over, after a while, when the test is exiting (running MPI_Finalize), the test will hang. When the processes on the nodes are checked, one node will be runni

Re: [OMPI users] fatalerror:openmpi-v2.x-dev-415-g5c9b192andopenmpi-dev-2696-gd579a07

2015-10-15 Thread Siegmar Gross
Hi Nick, hi Gilles, thank you very much! Now I can compile the package. CPPFLAGS didn't break the built procecss in the past and still doesn't break it for openmpi-1.10.1rc2. Nevertheless I've removed it from my configure commands. Kind regards Siegmar 2015-10-15 13:51 GMT+02:00 Siegmar Gro

Re: [OMPI users] fatal error: openmpi-v2.x-dev-415-g5c9b192 andopenmpi-dev-2696-gd579a07

2015-10-15 Thread Gilles Gouaillardet
Thanks Nick +1 Gilles On Thursday, October 15, 2015, Nick Papior wrote: > > > 2015-10-15 13:51 GMT+02:00 Siegmar Gross < > siegmar.gr...@informatik.hs-fulda.de > >: > >> Hi Gilles, >> >> thank you very much for your help to locate the problem. >> >> in the mean time, and as a work around, you

Re: [OMPI users] fatal error:openmpi-v2.x-dev-415-g5c9b192andopenmpi-dev-2696-gd579a07

2015-10-15 Thread Nick Papior
2015-10-15 13:51 GMT+02:00 Siegmar Gross < siegmar.gr...@informatik.hs-fulda.de>: > Hi Gilles, > > thank you very much for your help to locate the problem. > > in the mean time, and as a work around, you can make sure >> CPPFLAGS is not set in your environment( or set it to ""), and then >> invoke

Re: [OMPI users] fatal error:openmpi-v2.x-dev-415-g5c9b192andopenmpi-dev-2696-gd579a07

2015-10-15 Thread Siegmar Gross
Hi Gilles, thank you very much for your help to locate the problem. in the mean time, and as a work around, you can make sure CPPFLAGS is not set in your environment( or set it to ""), and then invoke configure without CPPFLAGS="" assuming you are using a bash shell, you can simply do CPPFLAG