Gilles,
Yes I saw that github thread, but wasn't certain this was the same issue.
Very possible that it is. Oddly enough, that github code doesn't crash for
us.
Adding a sleep call doesn't help. It's actually now crashing on the
MPI.init(args) call itself, and the JVM is reporting the error. Earli
Nate,
a similar issue has already been reported at
https://github.com/open-mpi/ompi/issues/369, but we have
not yet been able to figure out what is going wrong.
right after MPI_Init(), can you add
Thread.sleep(5000);
and see if it helps ?
Cheers,
Gilles
On 8/4/2015 8:36 AM, Nate Chambers wr
We've been struggling with this error for a while, so hoping someone more
knowledgeable can help!
Our java MPI code exits with a segfault during its normal operation, *but
the segfault occurs before our code ever uses MPI functionality like
sending/receiving. *We've removed all message calls and a
Hi Abhisek
On 08/03/2015 12:59 PM, abhisek Mondal wrote:
Hi,
I'm using openmpi-1.6.4 to distribute a jobs in 2 different nodes
using this command:
/"mpirun --hostfile myhostfile -np 10 nwchem my_code.nw"/
Here, "myhostfile" contains:
/cx0937 slots=5 /
/cx0934 slots=5/
I am assuming by pbs
Abhisek,
Generally, if you built openmpi with PBS support, it will automatically using
the appropriate nodes with ‘mpirun ’
If not, you can use the environment variables provided to your session:
mpirun --hostfile $PBS_NODEFILE -np $(cat $PBS_NODEFILE|wc -l)
Brian Andrus
ITACS/Research Comput
Hi,
I'm using openmpi-1.6.4 to distribute a jobs in 2 different nodes using
this command:
*"mpirun --hostfile myhostfile -np 10 nwchem my_code.nw"*
Here, "myhostfile" contains:
*cx0937 slots=5*
*cx0934 slots=5*
But as I have to submit the jobs using .pbs script, I'm wondering in this
case,
