[OMPI users] Configuration error with external hwloc

2015-03-17 Thread Peter Gottesman
Hey all, I am trying to compile Open MPI on a 32bit laptop running debian wheezy 7.8.0. When I > ../ompi-master/configure --prefix=$HOME/ompi-master/build > --with-hwloc=$HOME/openmpi/hwloc/build > --with-hwloc-libdir=$HOME/openmpi/hwloc/build/lib I get the error code: > checking whether we are

Re: [OMPI users] Questions regarding xpmem

2015-03-17 Thread Nathan Hjelm
It appears Cray solved the issue awhile ago. I reimported from the lastest version I have from Cray and applied my re-applied my patches. The new version has been pushed up to github. It appears to be stable enough for testing but there may be outstanding bugs. I will spend some time over the next

Re: [OMPI users] how to compile without ib support

2015-03-17 Thread Ahmed Salama
From: Jeff Squyres (jsquyres) To: "t...@riseup.net" ; Open MPI User's List Sent: Monday, 9 March 2015, 18:53:17 Subject: Re: [OMPI users] how to compile without ib support On Mar 9, 2015, at 12:19 PM, Tus wrote: > > I configured and installed 1.8.4 on my system. I was getting op

[OMPI users] openmpi 1.8 error

2015-03-17 Thread Ahmed Salama
when i configure openmpi-1.8.2 e.g. $./configure --enable-mpi-java --with-jdk-bindir=/usr/jdk6/bin --with-jdk-headers=/usr/jdk6/include --prefix=/usr/openmpi8 configure not complete, and I have in end of configure onfig.status: executing depfiles commandsconfig.status: executing opal/mca/event/l

Re: [OMPI users] Questions regarding xpmem

2015-03-17 Thread Nathan Hjelm
I was able to reproduce the issue on ubuntu with a 3.13 kernel. I think I know what is going wrong and I am working on a fix. -Nathan On Tue, Mar 17, 2015 at 12:02:43PM +0100, Tobias Kloeffel wrote: >Hello Nathan, > >I am using: >IMB 4.0 Update 2 >gcc version 4.8.1 >Intel co

Re: [OMPI users] monitoring the status of processors

2015-03-17 Thread Damien
Ganglia might help: http://ganglia.sourceforge.net/ Could be too high-level though. Damien On 2015-03-17 8:59 AM, Ralph Castain wrote: Not at the moment - at least, not integrated into OMPI at this time. We used to have sensors for such purposes in the OMPI code itself, but they weren’t used

Re: [OMPI users] monitoring the status of processors

2015-03-17 Thread Ralph Castain
Not at the moment - at least, not integrated into OMPI at this time. We used to have sensors for such purposes in the OMPI code itself, but they weren’t used and so we removed them. The resource manager generally does keep track of such things - see for example ORCM: https://github.com/open-mp

[OMPI users] monitoring the status of processors

2015-03-17 Thread etcamargo
Hi, All I would like to know if there is a (MPI) tool for monitoring the status of a processor (and your cores) at runtime, i.e., while I am running a MPI application. Let's suppose that some physical processors become overloaded while a MPI application is running. I am looking for a way to

Re: [OMPI users] Questions regarding xpmem

2015-03-17 Thread Tobias Kloeffel
Hello Nathan, I am using: IMB 4.0 Update 2 gcc version 4.8.1 Intel compilers 15.0.1 20141023 xpmem from your github I also tested pwscf (QuatumEespresso), here I can observe the same behavior. The entire calculation runs without problems, but a few mpi procs just stay alive and refuse to die,