Re: [OMPI users] Where is the error? (MPI program in fortran)

2014-04-15 Thread Gus Correa
Or just compiling with -g or -traceback (depending on the compiler) will give you more information about the point of failure in the error message. On 04/15/2014 04:25 PM, Ralph Castain wrote: Have you tried using a debugger to look at the resulting core file? It will probably point you right at

Re: [OMPI users] Where is the error? (MPI program in fortran)

2014-04-15 Thread Ralph Castain
Have you tried using a debugger to look at the resulting core file? It will probably point you right at the problem. Most likely a case of overrunning some array when #temps > 5 On Tue, Apr 15, 2014 at 10:46 AM, Oscar Mojica wrote: > Hello everybody > > I implemented a parallel simulated annea

Re: [OMPI users] mpirun runs in serial even I set np to several processors

2014-04-15 Thread Djordje Romanic
Using the instructions that you gave me I actually managed to setup the one that was already installed. I followed commands that you sent me and I made it work. It is an MPICH MPI. I feel somewhat bad not to installing Open MPI, but I think I will in a couple of weeks. I have to finish some simulat

Re: [OMPI users] mpirun runs in serial even I set np to several processors

2014-04-15 Thread Gus Correa
Hi Djordje That is great news. Congrats for making it work! Just out of curiosity: What did the trick? Did you install Open MPI from source, or did you sort out the various MPI flavors which were previously installed on your system? Now the challenge is to add OpenMP and run WRF in hybrid mode

Re: [OMPI users] mpirun runs in serial even I set np to several processors

2014-04-15 Thread Djordje Romanic
Hi, It is working now. It shows: starting wrf task0 of4 starting wrf task1 of4 starting wrf task2 of4 starting wrf task3 of4 -

[OMPI users] Where is the error? (MPI program in fortran)

2014-04-15 Thread Oscar Mojica
Hello everybody I implemented a parallel simulated annealing algorithm in fortran. The algorithm is describes as follows 1. The MPI program initially generates P processes that have rank 0,1,...,P-1. 2. The MPI program generates a starting point and sends it for all processes set T=T03. At the

Re: [OMPI users] mpirun runs in serial even I set np to several processors

2014-04-15 Thread Gus Correa
Hi Djordje "locate mpirun" shows items labled "intel", "mpich", and "openmpi", maybe more. Is it Ubuntu or Debian? Anyway, if you got this mess from somebody else, instead of sorting it out, it may save you time and headaches installing Open MPI from source. Since it is a single machine, there

Re: [OMPI users] Problem in Open MPI (v1.8) Performance on 10G Ethernet

2014-04-15 Thread Ralph Castain
Have you tried a typical benchmark (e.g., NetPipe or OMB) to ensure the problem isn't in your program? Outside of that, you might want to explicitly tell it to --bind-to core just to be sure it does so - it's supposed to do that by default, but might as well be sure. You can check by adding --re

Re: [OMPI users] File locking in ADIO, OpenMPI 1.6.4

2014-04-15 Thread Daniel Milroy
Hi Rob, The applications of the two users in question are different; I haven¹t looked through much of either code. I can respond to your highlighted situations in sequence: >- everywhere in NFS. If you have a Lustre file system exported to some >clients as NFS, you'll get NFS (er, that might no

Re: [OMPI users] Cygwin compilation problems for openmpi-1.8

2014-04-15 Thread Marco Atzeri
On 15/04/2014 14:42, Jeff Squyres (jsquyres) wrote: On Apr 15, 2014, at 8:35 AM, Marco Atzeri wrote: on 64bit 1.7.5, as Symantec Endpoint protections, just decided that a portion of 32bit MPI is a Trojan... It's the infamous MPI trojan. We take over your computer and use it to help cure

Re: [OMPI users] Cygwin compilation problems for openmpi-1.8

2014-04-15 Thread Jeff Squyres (jsquyres)
On Apr 15, 2014, at 8:35 AM, Marco Atzeri wrote: > on 64bit 1.7.5, > as Symantec Endpoint protections, just decided > that a portion of 32bit MPI is a Trojan... It's the infamous MPI trojan. We take over your computer and use it to help cure cancer. :p -- Jeff Squyres jsquy...@cisco.com Fo

Re: [OMPI users] Cygwin compilation problems for openmpi-1.8

2014-04-15 Thread Marco Atzeri
On 15/04/2014 13:31, Cristian Butincu wrote: This is the simple MPI program (test.c) I was talking about: #include #include int main(int argc, char* argv[]) { int my_rank; /* rank of process */ int p; /* number of processes */ /* start up MPI */ MPI_Init(&argc, &argv);

Re: [OMPI users] Cygwin compilation problems for openmpi-1.8

2014-04-15 Thread Cristian Butincu
This is the simple MPI program (test.c) I was talking about: #include #include int main(int argc, char* argv[]) {     int my_rank; /* rank of process */     int p; /* number of processes */     /* start up MPI */     MPI_Init(&argc, &argv);     /* find out process rank */     MPI_Comm_rank(MP

[OMPI users] Problem in Open MPI (v1.8) Performance on 10G Ethernet

2014-04-15 Thread Muhammad Ansar Javed
Hi, I am trying to benchmark Open MPI performance on 10G Ethernet network between two hosts. The performance numbers of benchmarks are less than expected. The maximum bandwidth achieved by OMPI-C is 5678 Mbps and I was expecting around 9000+ Mbps. Moreover latency is also quite higher than expected