Re: [OMPI users] ctrl+c to abort a job with openmpi-1.7.5rc2

2014-03-13 Thread tmishima
I happened to misspell a hostname, then it hanged. [mishima@manage ~]$ mpirun -np 6 -host node05,nod06 ~/mis/openmpi/demos/myprog nod06: Unknown host mpirun: abort is already in progress...hit ctrl-c again to forcibly terminate Tetsuya > No problem - we appreciate you taking the time to confir

Re: [OMPI users] mpi.isend still not working (diagnosed)

2014-03-13 Thread Ross Boylan
On Thu, 2014-03-13 at 14:53 -0700, Ross Boylan wrote: > On Thu, 2014-03-13 at 13:13 -0700, Ross Boylan wrote: > > I might just switch to mpi.send, though the fact that something is > > going > > wrong makes me nervous. > I tried using mpi.send, but it fails also. The failure behavior is > peculia

Re: [OMPI users] ctrl+c to abort a job with openmpi-1.7.5rc2

2014-03-13 Thread Ralph Castain
No problem - we appreciate you taking the time to confirm. Jeff encountered something late today, so we may indeed still have a lingering problem. :-( Will keep you posted Ralph On Mar 13, 2014, at 5:08 PM, tmish...@jcity.maeda.co.jp wrote: > > > Hi Ralph, I'm late to your release again due

Re: [OMPI users] ctrl+c to abort a job with openmpi-1.7.5rc2

2014-03-13 Thread tmishima
Hi Ralph, I'm late to your release again due to TD. At that time, I manually applied #4386 and #4383 to 1.7 branch - namely openmpi-1.7.5rc2, and did the check. I might have made some mistake. Now, I found openmpi-1.7.5rc3 had just released and confirmed it worked fine, thanks. Tetsuya > It's

Re: [OMPI users] mpi.isend still not working (was trying to use personal copy of 1.7.4--solved)

2014-03-13 Thread Ross Boylan
On Thu, 2014-03-13 at 13:13 -0700, Ross Boylan wrote: > I might just switch to mpi.send, though the fact that something is > going > wrong makes me nervous. I tried using mpi.send, but it fails also. The failure behavior is peculiar. After I launch the processes I can send a message to the assem

Re: [OMPI users] mpi.isend still not working (was trying to use personal copy of 1.7.4--solved)

2014-03-13 Thread Ross Boylan
I changed the calls to dlopen in Rmpi.c so that it tried libmpi.so before libmpi.so.0. I also rebuilt MPI, R, and Rmpi as suggested earlier by Bennet Fauber (http://www.open-mpi.org/community/lists/users/2014/03/23823.php). Thanks Bennet! My theory is that the change to dlopen by itself was suffi

Re: [OMPI users] trying to use personal copy of 1.7.4

2014-03-13 Thread Ross Boylan
On Wed, 2014-03-12 at 10:52 -0400, Bennet Fauber wrote: > My experience with Rmpi and OpenMPI is that it doesn't seem to do well > with the dlopen or dynamic loading. I recently installed R 3.0.3, and > Rmpi, which failed when built against our standard OpenMPI but > succeeded using the following

Re: [OMPI users] Question about "--appfile"

2014-03-13 Thread Ralph Castain
Huh - well, the man page is definitely wrong. We ignore all other app information on the command line, but not the MCA parameters. On Mar 13, 2014, at 6:27 AM, Jianyu Liu wrote: > Hi, > > The man page said all other command line options will be ignored if --appfile > used. > > So just won

[OMPI users] Question about "--appfile"

2014-03-13 Thread Jianyu Liu
Hi, The man page said all other command line options will be ignored if --appfile used. So just wondering 1. how to specify "--mca btl ^sm " option while launching MPMD applications with --appfile? 2. how to know the option "--mca btl ^sm " worked? Appreciating your kindly help

Re: [OMPI users] ctrl+c to abort a job with openmpi-1.7.5rc2

2014-03-13 Thread Ralph Castain
It's okay - we thought we had it fixed, but not for that scenario. On Mar 12, 2014, at 9:02 PM, tmish...@jcity.maeda.co.jp wrote: > > > Sorry for disturbing, please keep going ... > > Tetsuya > >> Yes, I know - I am just finishing the fix now. >> >> On Mar 12, 2014, at 8:48 PM, tmish...@jcit

Re: [OMPI users] SIGSEV when running OMPI Java binding

2014-03-13 Thread Ralph Castain
We haven't figured it out yet - it seems somewhat erratic as your observations don't match anything we are seeing on our machines. We know the coll/ml component is causing trouble for Java applications (but nothing else, oddly enough), but that doesn't match your experience. On Mar 12, 2014, a

Re: [OMPI users] ctrl+c to abort a job with openmpi-1.7.5rc2

2014-03-13 Thread tmishima
Sorry for disturbing, please keep going ... Tetsuya > Yes, I know - I am just finishing the fix now. > > On Mar 12, 2014, at 8:48 PM, tmish...@jcity.maeda.co.jp wrote: > > > > > > > Hi Ralph, this problem is not fixed completely by today's latest > > ticket #4383, I guess ... > > > > https://sv

Re: [OMPI users] SIGSEV when running OMPI Java binding

2014-03-13 Thread Saliya Ekanayake
Just checking if there's some solution for this. Thank you, Saliya On Tue, Mar 11, 2014 at 10:54 PM, Saliya Ekanayake wrote: > I forgot to mention that I tried the hello.c version instead of Java and > it too failed in a similar manner, but > > 1. On a single node with --mca btl ^tcp it went up