Re: [OMPI users] Problem building OpenMPI 1.6.4 with PGI 13.4

2013-05-29 Thread Blosch, Edwin L
You steered me right. The PGI support representative said, regarding 13.4: This is a known issue where there's a compatibility issue with the "stddef.h" header file we ship and GCC 4.6/4.7. We were able to fix the problem in the 13.5 compilers (TPR#19320)  If you can't download and install 13.

Re: [OMPI users] Problem building OpenMPI 1.6.4 with PGI 13.4

2013-05-29 Thread Thompson, Matt (GSFC-610.1)[SCIENCE SYSTEMS AND APPLICATIONS INC]
Edwin, I just built Open MPI 1.6.4 with PGI 13.5 today and had no problem. How did you configure your build? Matt On May 29, 2013, at 5:26 PM, "Blosch, Edwin L" mailto:edwin.l.blo...@lmco.com>> wrote: I’m having trouble building OpenMPI 1.6.4 with PGI 13.4. Suggestions? checking alignment of

Re: [OMPI users] EXTERNAL: Re: Problem building OpenMPI 1.6.4 with PGI 13.4

2013-05-29 Thread Blosch, Edwin L
The PGI user forum has a recent post regarding PGI 13.2 and OpenMPI 1.6.4. The user had effectively a bad install of the compiler. Some file "stddef.h" provided within the PGI installation was missing, and when it was individually supplied, compilation still failed. Basically he thought other

Re: [OMPI users] Problem building OpenMPI 1.6.4 with PGI 13.4

2013-05-29 Thread Nathan Hjelm
It works with PGI 12.x and it better work with newer versions since offsetof is ISOC89/ANSIC. -Nathan On Wed, May 29, 2013 at 09:31:58PM +, Jeff Squyres (jsquyres) wrote: > Edwin -- > > Can you ask PGI support about this? I swear that the PGI compiler suite has > supported offsetof before

Re: [OMPI users] Problem building OpenMPI 1.6.4 with PGI 13.4

2013-05-29 Thread Jeff Squyres (jsquyres)
Edwin -- Can you ask PGI support about this? I swear that the PGI compiler suite has supported offsetof before. On May 29, 2013, at 5:26 PM, "Blosch, Edwin L" wrote: > I’m having trouble building OpenMPI 1.6.4 with PGI 13.4. Suggestions? > > checking alignment of double... 8 > checking ali

Re: [OMPI users] 64-bit version of openmpi-1.6.5a1r28554 hangs

2013-05-29 Thread Jeff Squyres (jsquyres)
Siegmar -- I'm a bit confused by your final table: > local machine| -host > | sunpc1 | linpc1 | rs1 > -+++--- > sunpc1 (Solaris 10, x86_64) | ok | hangs | hangs > linpc1 (Solaris 10, x86_64) | hang

[OMPI users] Problem building OpenMPI 1.6.4 with PGI 13.4

2013-05-29 Thread Blosch, Edwin L
I'm having trouble building OpenMPI 1.6.4 with PGI 13.4. Suggestions? checking alignment of double... 8 checking alignment of long double... 8 checking alignment of float _Complex... 4 checking alignment of double _Complex... 8 checking alignment of long double _Complex... 8 checking alignment of

Re: [OMPI users] OpenMPI installation

2013-05-29 Thread Elken, Tom
> As a guess: I suggest looking for a package named openmpi-devel, or something > like that. [Tom] Yes, you want "-devel" in addition to the RPM you listed. Going to the URL below, I see listed: openmpi-1.5.4-1.el6.x86_64.rpm - Open Message Passing Interface openmpi-devel-1.5.4-1.el6.x86_64.rp

Re: [OMPI users] 64-bit version of openmpi-1.6.5a1r28554 hangs

2013-05-29 Thread Siegmar Gross
Hello Ralph, > Could you please clarify - are you mixing 32 and 64 bit versions > in your runs that have a problem? No, I have four different versions on each machine. tyr fd1026 1250 ls -ld /usr/local/openmpi-1.6.5_* drwxr-xr-x 7 root root 512 May 23 14:00 /usr/local/openmpi-1.6.5_32_cc drwxr-x

Re: [OMPI users] Question on building OpenMPI with support for memory affinity

2013-05-29 Thread Ralph Castain
Yeah, it's stale - we need to update it. Thx! On May 29, 2013, at 6:45 AM, "Blosch, Edwin L" wrote: > The FAQ talks about building support for memory affinity by adding > –with-libnuma= > > However, I did not do that, and yet when I check ompi_info, it looks like > there is support from the

Re: [OMPI users] OpenMPI installation

2013-05-29 Thread Jeff Squyres (jsquyres)
We don't really know how downstream packagers package Open MPI; you'll need to contact the Centos Open MPI packager for specific help. As a guess: I suggest looking for a package named openmpi-devel, or something like that. On May 29, 2013, at 7:41 AM, alankrutha reddy wrote: > Hi, > >

[OMPI users] Question on building OpenMPI with support for memory affinity

2013-05-29 Thread Blosch, Edwin L
The FAQ talks about building support for memory affinity by adding -with-libnuma= However, I did not do that, and yet when I check ompi_info, it looks like there is support from the hwloc module. Can I assume the FAQ is a little stale and that -with-libnuma is not really necessary anymore? [b

Re: [OMPI users] -Re Post- MPI_SUM is not defined on the MPI_INTEGER datatype

2013-05-29 Thread Jeff Squyres (jsquyres)
George -- I've confirmed that it works with 1.6.4 and am awaiting additional information from this user. On May 29, 2013, at 8:08 AM, George Bosilca wrote: > I can't check on the 1.6.4 posted on the web but I can confirm this test > works as expected on the current 1.6 branch (the next to b

Re: [OMPI users] -Re Post- MPI_SUM is not defined on the MPI_INTEGER datatype

2013-05-29 Thread George Bosilca
I can't check on the 1.6.4 posted on the web but I can confirm this test works as expected on the current 1.6 branch (the next to be 1.6.5). So this might have been fixed along the way. George. On May 27, 2013, at 07:05 , Hayato KUNIIE wrote: > Hello > > I posted this topic in last week.

[OMPI users] OpenMPI installation

2013-05-29 Thread alankrutha reddy
Hi, I have downloaded openmpi from http://pkgs.org/centos-6-rhel-6/centos-rhel-x86_64/openmpi-1.5.4-1.el6.x86_64.rpm.html And I have installed using rpm -i openmpi-1.5.4-1.el6.x86_64.rpm. mpicc & mpif77 are not generated. How to generate those binaries. Can anyone help me. Thank you -- *Re