Re: [OMPI users] /usr/bin/ld: skipping incompatible ......

2013-05-09 Thread Matteo Parsani
Hello Jeff, thank you for your feedback. I have this problem when I compile c, c++ and fortran code with the mpi bindings, i.e. mpicc, mpicxx and mpif90. If I compile directly codes with gcc, g++ or gfortran I do not have this problem. This is why I think it's something related to openmpi. Thanks!

Re: [OMPI users] mpirun error

2013-05-09 Thread Elken, Tom
> It looks like your PATH is pointing to the Intel MPI mpirun, > not to the Open MPI mpirun/mpiexec. [Tom] Just to expand a little on this, it looks like your path is pointing to the Intel MPI run-time version (mpirt) that is included with the Intel Compiler and it's PATH/LD_LIBRARY_PATH is set

Re: [OMPI users] mpirun error

2013-05-09 Thread Gus Correa
Hi It looks like your PATH is pointing to the Intel MPI mpirun, not to the Open MPI mpirun/mpiexec. echo $PATH may give you a clue of what is going on. Make sure you use the same MPI implementation to compile (mpicc, mpif90, etc) and to launch the program (mpirun/mpiexec). Check the OpenMPI FA

Re: [OMPI users] mpirun error

2013-05-09 Thread Pepito Perez
Pradeep Jha ccs.engg.nagoya-u.ac.jp> writes: > > Hello, > When I am trying to run a perfectly running parallel code on a new Linux machine, using the following command: > > -- > > mpirun -np 16 name_of_executable > >

Re: [OMPI users] /usr/bin/ld: skipping incompatible ......

2013-05-09 Thread Jeff Squyres (jsquyres)
I think you cited the correct prior thread on the OMPI users list, and I think it correctly identifies the problem: the linker is finding the "wrong" library first, determines that it is wrong, and skips it. You probably should remove the "wrong" library from your LD_LIBRARY_PATH (e.g., if you'

Re: [OMPI users] confirm f86638f44cf1158fef247b0df762b406d12ec202

2013-05-09 Thread Jeff Squyres (jsquyres)
No. Open MPI has its own shared memory transport. On May 9, 2013, at 3:34 AM, Bob Ilgner wrote: > Dear Community, > > > When processing on a shared memory processor, does open-MPI use the same > "nemesis" channel approach as used by mpich ? > > Regards, bob > > > ___

[OMPI users] Fwd: confirm f86638f44cf1158fef247b0df762b406d12ec202

2013-05-09 Thread Bob Ilgner
Dear Community, When processing on a shared memory processor, does open-MPI use the same "nemesis" channel approach as used by mpich ? Regards, bob