[OMPI users] problems building openmpi v 1.6.4 using a local build of gcc 4.7.2 on rhel6

2013-04-04 Thread Alan Sayre
I'm trying to build openmpi v.1.6.4 using a local build of gcc 4.7.2 on rhel6. The configure and build scripts are attached. The config.log and build.output are attached. The last few lines of the build output is: make[3]: Entering directory `/nm/programs/third_party/tmp-install/openmpi-1.6.4-bl

[OMPI users] configure problem

2013-04-04 Thread Alan Sayre
I'm trying to build v 1.6.4 with a local install of gcc 4.7.2. I am trying to use the following script OWD=$PWD GMPD=$OWD/gmp-4.3.2 MPFRD=$OWD/mpfr-2.4.2 MPCD=$OWD/mpc-0.8.1 PPLD=$OWD/ppl-0.11 CLOOG=$OWD/cloog-ppl-0.15.9 GCC=$OWD/gcc-4.7.2-rhel5 export LD_LIBRARY_PATH=$GCC/lib64:$GMPD/lib:$MPFR

Re: [OMPI users] openmpi-1.7 failed to build on Centos 6.4

2013-04-04 Thread Limin Gu
Thanks Ralph! After I removed --without-memory-manager --with-memory-manager=no, it built fine. Limin On Thu, Apr 4, 2013 at 3:26 PM, Ralph Castain wrote: > Fix is coming - it is the --without-memory-manager option (which is the > same thing as --with-memory-manager=no) that is breaking it.

Re: [OMPI users] network related MPI errors on Amazon EC2

2013-04-04 Thread Ralph Castain
Sounds like something is making the TCP connections unstable. Last time I looked at HVM, they were running something like 64G of memory? If you have more than one proc on a node (as your output would indicate), and you are doing collectives on such large data sizes, it's quite possible you are r

Re: [OMPI users] openmpi-1.7 failed to build on Centos 6.4

2013-04-04 Thread Ralph Castain
Fix is coming - it is the --without-memory-manager option (which is the same thing as --with-memory-manager=no) that is breaking it. On Apr 4, 2013, at 12:19 PM, Limin Gu wrote: > Hi all, > > I downloaded openmpi-1.7, but it failed to build on Centos 6.4 with following > error: > > make[10]

[OMPI users] openmpi-1.7 failed to build on Centos 6.4

2013-04-04 Thread Limin Gu
Hi all, I downloaded openmpi-1.7, but it failed to build on Centos 6.4 with following error: make[10]: Entering directory `/root/openmpi/openmpi-1.7/ompi/contrib/vt/vt/extlib/otf/tools/otfmerge/mpi' CC otfmerge_mpi-handler.o CC otfmerge_mpi-otfmerge.o CCLD otfmerge-mpi /root

[OMPI users] Fwd: network related MPI errors on Amazon EC2

2013-04-04 Thread Yevgeny Popkov
Hi, I am running some matrix-algebra-based calculations on Amazon EC2 (HVM instances running Ubuntu 11.1 with OpenMPI 1.6.4 and python bindings with mpi4py 1.3). I am using StarCluster to spin up instances so all nodes from a given cluster are in the same placement group (i.e. are on the same 10

Re: [OMPI users] Confused on simple MPI/OpenMP program

2013-04-04 Thread Reuti
Hi, Am 04.04.2013 um 04:35 schrieb Ed Blosch: > Consider this Fortran program snippet: > > program test use omp_lib include 'mpif.h' might be missing. > ! everybody except rank=0 exits. > call mpi_init(ierr) > call mpi_comm_rank(MPI_COMM_WORLD,irank,ierr) > if (irank /= 0) then >call