Re: [OMPI users] seg fault and 32-/64-bit mismatch in openmpi-1.7rc8r28201

2013-03-22 Thread Ralph Castain
On Mar 22, 2013, at 5:06 AM, Siegmar Gross wrote: > Solaris 10, x86_64 and sparc, SunC 5.12, 64-bit > --- > > tyr openmpi-1.7-SunOS.x86_64.64_cc 565 tail -15 log.make.SunOS.x86_64.64_cc > F77 libvt_fmpi_la-vt_fmpiconst_2.lo > F77LDlibvt-fm

Re: [OMPI users] mpi_init waits 64 seconds if vpn is connected

2013-03-22 Thread Ralph Castain
Ah, yes - that pinpoints the problem. It looks like your vpn is indeed interfering with connections. I suspect it must be some kind of vpn/Ubuntu configuration issue as I have the same experience on my Mac laptop that you report (i.e., no issue). I'd suggest googling the Ubuntu site (or just in

Re: [OMPI users] Running openmpi jobs on two system

2013-03-22 Thread Ralph Castain
On Mar 22, 2013, at 3:42 AM, Syed Ahsan Ali wrote: > Actually due to some data base corruption I am not able to add any new node > to cluster from the installer node. So I want to run parallel job on more > nodes without adding them to existing cluster. > You are right the binaries must be pre

[OMPI users] seg fault and undefined symbol in openmpi-1.9r28203

2013-03-22 Thread Siegmar Gross
Hi today I tried to install openmpi-1.9r28203 and got the following errors. I always used the following command (adapted to different architectures). ../openmpi-1.9r28203/configure --prefix=/usr/local/openmpi-1.9_64_cc \ --libdir=/usr/local/openmpi-1.9_64_cc/lib64 \ --with-jdk-bindir=/usr/loc

[OMPI users] seg fault and 32-/64-bit mismatch in openmpi-1.7rc8r28201

2013-03-22 Thread Siegmar Gross
Hi today I tried to install openmpi-1.7rc8r28201 and got the following errors. I always used the following command (adapted to different architectures). ../openmpi-1.7rc8r28201/configure --prefix=/usr/local/openmpi-1.7_32_cc \ --with-jdk-bindir=/usr/local/jdk1.7.0_07-32/bin \ --with-jdk-heade

Re: [OMPI users] mpi_init waits 64 seconds if vpn is connected

2013-03-22 Thread David A. Boger
Following up on your TCP remark, I found that during the delay, netstat -tnp shows tcp0 1 192.168.1.3:56343 192.168.1.3:47830 SYN_SENT 24191/mpi_hello and that while the vpn is connected, I am unable to ping 192.168.1.3 (the machine I am on). On the other hand, on the

Re: [OMPI users] mpi_init waits 64 seconds if vpn is connected

2013-03-22 Thread David A. Boger
Thanks Ralph. I have a Mac OS X 10.6.8 laptop where I can run open-mpi 1.2.8 and open-mpi 1.6.4 with the vpn connected without any problem, even without having to exclude the vpn interface, so you're probably right -- the existence of the vpn interface alone doesn't explain the problem. Neverthele

Re: [OMPI users] Running openmpi jobs on two system

2013-03-22 Thread Syed Ahsan Ali
Actually due to some data base corruption I am not able to add any new node to cluster from the installer node. So I want to run parallel job on more nodes without adding them to existing cluster. You are right the binaries must be present on the remote node as well. Is this possible throught nfs?

Re: [OMPI users] Running openmpi jobs on two system

2013-03-22 Thread Reuti
Am 22.03.2013 um 10:14 schrieb Syed Ahsan Ali: > I have a very basic question. If we want to run mpirun job on two systems > which are not part of cluster, then how we can make it possible. Can the host > be specifiend on mpirun which is not compute node, rather a stand alone > system. Sure, t

[OMPI users] Running openmpi jobs on two system

2013-03-22 Thread Syed Ahsan Ali
I have a very basic question. If we want to run mpirun job on two systems which are not part of cluster, then how we can make it possible. Can the host be specifiend on mpirun which is not compute node, rather a stand alone system. Thanks Ahsan

Re: [OMPI users] mpi_init waits 64 seconds if vpn is connected

2013-03-22 Thread Ralph Castain
The process is hanging trying to open a TCP connection back to mpirun. I would have thought that excluding the vpn interface would help, but it could be that there is still some interference from the vpn software itself - as you probably know, vpn generally tries to restrict connections. I don'

Re: [OMPI users] modified hostfile does not work with openmpi1.7rc8

2013-03-22 Thread Ralph Castain
Thanks - yes, the problem was in the launch_support.c code. I'll mark this as checked and apply it to the v1.7.0 release. Thanks for the help! Ralph On Mar 21, 2013, at 9:06 PM, tmish...@jcity.maeda.co.jp wrote: > > > Hi Ralph, > > I tried to patch trunk/orte/mca/plm/base/plm_base_launch_sup

Re: [OMPI users] modified hostfile does not work with openmpi1.7rc8

2013-03-22 Thread tmishima
Hi Ralph, I tried to patch trunk/orte/mca/plm/base/plm_base_launch_support.c. I didn't touch debugging part of plm_base_launch_support.c and whole of trunk/orte/mca/rmaps/base/rmaps_base_support_fns.c, because rmaps_base_support_fns.c seems to include only updates for debugging. Then, it works