Re: [OMPI users] modified hostfile does not work with openmpi1.7rc8

2013-03-18 Thread Jeff Squyres (jsquyres)
Oy; that's weird. I'm afraid we're going to have to wait for Ralph to answer why that is happening -- sorry! On Mar 18, 2013, at 4:45 PM, wrote: > > > Hi Correa and Jeff, > > Thank you for your comments. I quickly checked your suggestion. > > As a result, my simple example case worked wel

Re: [OMPI users] modified hostfile does not work with openmpi1.7rc8

2013-03-18 Thread tmishima
Hi Correa and Jeff, Thank you for your comments. I quickly checked your suggestion. As a result, my simple example case worked well. export OMP_NUM_THREADS=4 mpiexec -bynode -np 2 ./my_program && #PBS -l nodes=2:ppn=4 But, practical case that more than 1 process was allocated to a node lik

[OMPI users] Call For Papers: EuroMPI 2013 Paper. Last days for submissions. Deadline: March 29th, 2013

2013-03-18 Thread Francisco Javier Garcia Blas
Dear Sir or Madam, (We apologize if you receive multiple copies of this message) Recent Advances in Message Passing Interface. 20th European MPI Users' Group Meeting (EuroMPI 2013) EuroMPI 2013 is being held in cooperation with SIG

Re: [OMPI users] Strange IO issues in MPI_Finalize

2013-03-18 Thread Jeff Squyres (jsquyres)
Brian -- While I was on a plane today, I took a whack at making OMPI behave better when you forget to MPI_File_close() a file. Can you try this patch (should apply cleanly to OMPI trunk, v1.6, or v1.7): https://svn.open-mpi.org/trac/ompi/changeset/28177 On Mar 18, 2013, at 12:42 PM, Jef

Re: [OMPI users] openmpi java binding errors

2013-03-18 Thread Jeff Squyres (jsquyres)
I'm back online - here's the URL you need to see the required versions of autotools to build from a Subversion checkout: http://www.open-mpi.org/svn/building.php On Mar 18, 2013, at 12:42 PM, Jeff Squyres (jsquyres) wrote: > Did you build from a Subversion checkout, and therefore run aut

[OMPI users] Minor bug: invalid values for opal_signal MCA parameter cause internal error

2013-03-18 Thread Jeremiah Willcock
If a user gives an invalid value for the opal_signal MCA parameter, such as in the command: mpirun -mca opal_signal x /bin/ls the error produced by Open MPI 1.6.3 is: -- It looks like opal_init failed for some reason; your

Re: [OMPI users] openmpi java binding errors

2013-03-18 Thread Jeff Squyres (jsquyres)
Did you build from a Subversion checkout, and therefore run autogen.pl? If so, it sounds like you need to upgrade your version of the autotools -- you might be using a libtool package (and therefore libltdl) that is too old. See the autotools page on the OMPI web site (sorry, I'm not connected r

Re: [OMPI users] Strange IO issues in MPI_Finalize

2013-03-18 Thread Jeff Squyres (jsquyres)
I *believe* that this means that you didn't MPI_File_close a file. We're not giving a very helpful error message here (it's downright misleading, actually), but I'm pretty sure that this is the case. On Mar 6, 2013, at 10:28 AM, "Smith, Brian E." wrote: > HI all, > > I have some code that us

Re: [OMPI users] modified hostfile does not work with openmpi1.7rc8

2013-03-18 Thread Jeff Squyres (jsquyres)
On Mar 17, 2013, at 10:55 PM, Gustavo Correa wrote: > In your example, have you tried not to modify the node file, > launch two mpi processes with mpiexec, and request a "-bynode" distribution > of processes: > > mpiexec -bynode -np 2 ./my_program This should work in 1.7, too (I use these kin