Re: [OMPI users] Programming with Big Data in R

2013-02-26 Thread Daniels, Marcus G
Also, with regard to your subject line, there are a wide variety of options for connecting to data. Everything from `redis' (http://redis.io/, http://cran.r-project.org/web/packages/rredis/index.html) to HDF5 (http://cran.r-project.org/web/packages/hdf5/index.html), to memory mapped files (h

Re: [OMPI users] Programming with Big Data in R

2013-02-26 Thread Daniels, Marcus G
On Feb 26, 2013, at 12:17 PM, Ralph Castain wrote: > I have someone who is interested in knowing if anyone is currently working > with pbdR: > It looks to me like an evolution of the capabilities in the `snow' wrapper of `Rmpi', but the addition of the BLACS/PBLAS/ScaLAPACK interfaces data st

[OMPI users] Programming with Big Data in R

2013-02-26 Thread Ralph Castain
Hi folks I have someone who is interested in knowing if anyone is currently working with pbdR: http://r-pbd.org/ Specifically, they are trying to evaluate it for their purposes, and would like to hear of any issues and/or other adoption experiences. You can send any comments directly to me, o

Re: [OMPI users] MPI_Abort under slurm

2013-02-26 Thread Ralph Castain
It should work - check the following srun option: -K, --kill-on-bad-exit[=0|1] Controls whether or not to terminate a job if any task exits with a non-zero exit code. If this option is not specified, the default action will be based upon the SLURM configu

Re: [OMPI users] MPI_Abort under slurm

2013-02-26 Thread Bokassa
Hi Ralph, thanks for your answer. I am using: >mpirun --version mpirun (Open MPI) 1.5.4 Report bugs to http://www.open-mpi.org/community/help/ and slurm 2.5. Should I try to upgrade to 1.6.5? /David/Bigagli www.davidbigagli.com On Mon, Feb 25, 2013 at 7:38 PM, Bokassa wrote: > Hi, >I