Re: [OMPI users] Where to start with MPI on OSX?

2012-11-09 Thread shiny knight
Thanks Reuti for the sample. I have the latest Xcode available on the Apple dev center; Xcode 4 probably? I think that the reason why nothing happens is because the code runs via MPICH2; tried to launch mpicc with the -echo flag and i see in the output -I/opt/local/include/mpich2 -L/opt/local/l

Re: [OMPI users] gathering problem

2012-11-09 Thread George Bosilca
Gary, Looking at the trace it become clear that the culprit is the receiving process and not the sending one. Let me walk you over. I split the trace in several groups. The first one will look at the sender (proc39) and the receiver (proc28) for the first message. PROC39: 59.2268409810; SEND_R

Re: [OMPI users] EXTERNAL: Re: gathering problem

2012-11-09 Thread Hodge, Gary C
I set processor affinity by running a script after all processes are running. My processes are bound to their own core. Each process has 3 threads, one is my app and the other 2 appear after MPI_Init is called. Each thread in a process is bound to the same core and the processes are running with

Re: [OMPI users] gathering problem

2012-11-09 Thread Ralph Castain
Talked to one of our developers (afraid everyone is swamped with SC12 right now), and we have a few suggestions: 1. to reduce OS-jitter, have you tried --bind-to-core or --bind-to-socket? This would avoid context switches throwing you onto different memory segments 2. we recall you had an issue

Re: [OMPI users] mpif90 wrapper is using -pthread as option to ifort, but option is depreciated

2012-11-09 Thread Martin Siegert
On Fri, Nov 09, 2012 at 11:05:23AM -0700, Craig Tierney wrote: > I just built OpenMPI 1.6.3 with ifort 12.1.4. When running ifort I am > getting the warning: > > ifort: command line remark #10010: open '-pthread' is depreciated and > will be removed in a future release. See '-help deprecated'.

Re: [OMPI users] mpif90 wrapper is using -pthread as option to ifort, but option is depreciated

2012-11-09 Thread Jeff Squyres
We're actually getting this flag from Libtool during configure. :-\ Hopefully they're updating Libtool upstream to account for this. If Ralph's suggestion doesn't work, you can always edit the wrapper compiler data files to remove -pthread after you "make install". On Nov 9, 2012, at 1:21 PM,

Re: [OMPI users] mpif90 wrapper is using -pthread as option to ifort, but option is depreciated

2012-11-09 Thread Reuti
Am 09.11.2012 um 19:15 schrieb Ralph Castain: > Try configuring --without-threads > > > On Nov 9, 2012, at 10:05 AM, Craig Tierney wrote: > >> I just built OpenMPI 1.6.3 with ifort 12.1.4. When running ifort I am >> getting the warning: >> >> ifort: command line remark #10010: open '-pthread

Re: [OMPI users] mpif90 wrapper is using -pthread as option to ifort, but option is depreciated

2012-11-09 Thread Ralph Castain
Try configuring --without-threads On Nov 9, 2012, at 10:05 AM, Craig Tierney wrote: > I just built OpenMPI 1.6.3 with ifort 12.1.4. When running ifort I am > getting the warning: > > ifort: command line remark #10010: open '-pthread' is depreciated and > will be removed in a future release.

[OMPI users] mpif90 wrapper is using -pthread as option to ifort, but option is depreciated

2012-11-09 Thread Craig Tierney
I just built OpenMPI 1.6.3 with ifort 12.1.4. When running ifort I am getting the warning: ifort: command line remark #10010: open '-pthread' is depreciated and will be removed in a future release. See '-help deprecated'. Is -pthread really needed? Is there a configure option to change this or

Re: [OMPI users] gathering problem

2012-11-09 Thread Hodge, Gary C
Answering my own question, I have downloaded openMPI 1.6.2 and still get the delay in the MPI_Send. Previously, I was using openMPI 1.4.1 I configured 1.6.2 with -enable-peruse and have implemented PERUSE callbacks. Here is a trace of gb2 (PROC39) sending messages to ob (PROC28) PROC39: 59.2268

[OMPI users] Open MPI @SC next week

2012-11-09 Thread Jeff Squyres
Who's going to Salt Lake City for SC12 next week? I am! Come find me at the Cisco booth. I'll be talking about some ultra-low latency Ethernet stuff Cisco will be pushing upstream to Open MPI, and any other general MPI/HPC/Notre Dame football stuff that you'd like to discuss. Oh, and probab

Re: [OMPI users] MPI_ERR_TRUNCATE: On Broadcast

2012-11-09 Thread Jeff Squyres
Offhand, your code looks fine. Can you send a small, self-contained example? On Nov 8, 2012, at 9:42 AM, Lim Jiew Meng wrote: > I have an int I intend to broadcast from root (rank==(FIELD=0)). > > int > winner > > > if (rank == FIELD) { > > winner > = something; > } > > > MPI_Barrie

Re: [OMPI users] Where to start with MPI on OSX?

2012-11-09 Thread Jeff Squyres
On Nov 8, 2012, at 6:55 PM, Beatty, Daniel D CIV NAVAIR, 474300D wrote: > I have read that OMPI from source works on Mountain Lion, but there are some > dependencies to make it work with LLVM and to make GCC-Fortran transition to > LLVM. > > If there are some gurus out there who have done thi

Re: [OMPI users] Where to start with MPI on OSX?

2012-11-09 Thread Reuti
Am 09.11.2012 um 08:47 schrieb shiny knight: > Thanks for your replies. > > I use Snow Leopard, running ompi_info returns an error (command not found). I'm on this version too. Which version of Xcode do you use - "Xcode 3.2.6 and iOS SDK 4.3"? Attached is a small file which I can compile with t

Re: [OMPI users] Where to start with MPI on OSX?

2012-11-09 Thread shiny knight
Thanks for your replies. I use Snow Leopard, running ompi_info returns an error (command not found). I was looking for installers and I remember that I have installed MPICH2 if I recall correctly (I didn't knew about openMPI until today), so I have mpicc installed. Should I remove MPICH2 and i