Re: [OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread devendra rai
Hello Ralph, I finally solved the problem. My OS had installed another version of openmpi, which I removed. Also, I did not try 'make clean' before 'make'.  I found the problem by doing a verbose build of my application, and noticed that it was referring to libraries from /usr/lib64/mpi/, which

Re: [OMPI users] Request access to ompi-tests directory into svn

2012-01-05 Thread Юлов Дмитрий
I agree with you, but i didn't find the mail group list which I can you for sending message. Jeff> Perhaps we should move this over to the MTT mailing list. :-) Jeff> I'll reply in more detail over there... Jeff> On Jan 5, 2012, at 3:24 PM, Юлов Дмитрий wrote: >> Dear Jeff, >> >> Thanks

Re: [OMPI users] Request access to ompi-tests directory into svn

2012-01-05 Thread Jeff Squyres
Perhaps we should move this over to the MTT mailing list. :-) I'll reply in more detail over there... On Jan 5, 2012, at 3:24 PM, Юлов Дмитрий wrote: > Dear Jeff, > > Thanks a lot for answer. I agree with you that some tests are > available elsewhere, but these tests didn't explain

Re: [OMPI users] Request access to ompi-tests directory into svn

2012-01-05 Thread Юлов Дмитрий
Dear Jeff, Thanks a lot for answer. I agree with you that some tests are available elsewhere, but these tests didn't explain how I can to use it for with OpenMPI MTT framework. Please tell me do you have such document which will explain how I could use some external tests with MTT

Re: [OMPI users] Request access to ompi-tests directory into svn

2012-01-05 Thread Jeff Squyres
Hi, sorry for the delay -- I was on vacation and this week has been spent mostly in prep for the MPI Forum meeting next week. I'm slwly plowing through the mails that piled up during vacation. More below. On Jan 5, 2012, at 2:54 PM, Юлов Дмитрий wrote: > Does anybody say to me Jeff here o

Re: [OMPI users] Request access to ompi-tests directory into svn

2012-01-05 Thread Юлов Дмитрий
Hello, Does anybody say to me Jeff here or not? I am relly would like to have access to tests. What i need to do for that? Ralph> I believe access to the test suites is limited to official Ralph> members of the developer community, though I could be wrong as Ralph> it has been a long time sin

Re: [OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread Jeff Squyres
I thought Ralph answered this one already: http://www.open-mpi.org/community/lists/users/2012/01/18102.php On Jan 5, 2012, at 1:25 PM, devendra rai wrote: > Hello Ralph, > > Here is the command that I use to run my application: > > /home/Morpheus/CustomInstalledPrograms/OpenMPI-1.4.2/b

Re: [OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread devendra rai
  Hello Ralph, Here is the command that I use to run my application: /home/Morpheus/CustomInstalledPrograms/OpenMPI-1.4.2/bin/mpirun -np 2 -v --timestamp-output --tag-output --d kdbg ./MPIDerivedDataTypes where MPIDerivedDataTypes is the sample application. Best, Devendra _

Re: [OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread devendra rai
   Hello Ralph, This time, rebuilding with the configure line that I showed did not fix the problem. And, I am mighty clueless (with some desperation thrown in). Any ideas would be awesome. Best, Devendra From: Ralph Castain To: devendra rai ; Open MPI Use

Re: [OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread Ralph Castain
Guess I'm still confused a bit - are you saying that the rebuild no longer fixes the problem? Otherwise, I don't see a ready solution. If your system undergoes a significant change, then rebuilding is not an unexpected requirement. On Jan 5, 2012, at 10:39 AM, devendra rai wrote: > Hello Ralp

Re: [OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread devendra rai
Hello Ralph, Yes, historically, the rebuild fixed the problem. But, now, how do I rebuild against a new libc? And doesn't mpi build process automatically pick up whatever libc version I have? I cant seem to google this solution. I already included my configure line for building open-mpi. Th

Re: [OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread Ralph Castain
Let me see if I understand correctly. You performed some upgrades on Linux, and then orterun fails. Rebuilding OMPI resolved the problem. Is that correct? If so, then I'm not terribly surprised - it depends on what got upgraded. For example, if the default libc changed due to a revision upgrade

[OMPI users] Strange segfault in mpirun: orterun.c:486

2012-01-05 Thread devendra rai
Hello All, This has happened to me many times, but a simple rebuild of the Open-MPI generally fixed it. I had a perfectly working (and tested) MPI application till a few days ago. Since then, there has been some upgrades on my Linux OS (basically, the ones which the system picks up automatical

[OMPI users] Strange Segfault in mpirun: orterun.c:486

2012-01-05 Thread devendra rai
Hello All, This has happened to me many times, but a simple rebuild of the Open-MPI generally fixed it. I had a perfectly working (and tested) MPI application till a few days ago. Since then, there has been some upgrades on my Linux OS (basically, the ones which the system picks up automatical

Re: [OMPI users] Can we avoid derived datatypes?: Update!

2012-01-05 Thread Jeff Squyres
On Jan 5, 2012, at 5:35 AM, devendra rai wrote: > In general, we cannot assume portability of sending a C/C++ struct as a > stream of bytes. There must be a promise that data representation on machines > involved in the transmission must perform the same data layout. Correct. > I have a funct

[OMPI users] Can we avoid derived datatypes?: Update!

2012-01-05 Thread devendra rai
Dear All, I read a little more about MPI derived data types, and to answer my own question: In general, we cannot assume portability of sending a C/C++ struct as a stream of bytes. There must be a promise that data representation on machines involved in the transmission must perform the same d

[OMPI users] Issue with Open -MPI while running intel IMB benchmarks

2012-01-05 Thread Venkateswara Rao Dokku
Hi, We tried to run the Reduce_scatter test(given in IMB_3.2.1) on our customized OFED, the command used and the error thrown is given below... *command:* mpirun --prefix /usr/local/ -np 3 --mca btl openib,self,sm -H 192.168.0.157,192.168.0.167,192.168.0.177 --mca orte_base_help_aggregate 0 /