Hi Gus,
> Did you speak to the Rmpi author about this?
No, I haven't, but here's what the author wrote:
https://stat.ethz.ch/pipermail/r-sig-hpc/2009-February/000104.html
in which he states:
...The way of spawning R slaves under LAM is not working
any more under OpenMPI. Under LAM, one just
Tena Sakai wrote:
Fantastic, Gus! Now I think I got framework pretty much done.
The rest is to work on 'problem solving' end with R.
Many thanks for your insight and kindness. I really appreciate it.
Regards,
Tena Sakai
tsa...@gallo.ucsf.edu
Hi Tena
I'm glad that it helped somebody at the
Fantastic, Gus! Now I think I got framework pretty much done.
The rest is to work on 'problem solving' end with R.
Many thanks for your insight and kindness. I really appreciate it.
Regards,
Tena Sakai
tsa...@gallo.ucsf.edu
On 1/13/11 2:40 PM, "Gus Correa" wrote:
> Tena Sakai wrote:
>> Hi,
Tena Sakai wrote:
Hi,
I have a script I call fib.r. It looks like:
#!/usr/bin/env r
fib <- function( n ) {
a <- 0
b <- 1
for ( i in 1:n ) {
t <- b
b <- a
a <- a + t
Thank you, Hicham. I will check out bash man page.
Tena Sakai
tsa...@gallo.ucsf.edu
On 1/13/11 12:38 PM, "Hicham Mouline" wrote:
> I have some old memory of this where the .bashrc file and the .profile are
> distinguishing login and non-login.
> Also something to do with the - being an argume
Hi,
I have a script I call fib.r. It looks like:
#!/usr/bin/env r
fib <- function( n ) {
a <- 0
b <- 1
for ( i in 1:n ) {
t <- b
b <- a
a <- a + t
}
I have some old memory of this where the .bashrc file and the .profile are
distinguishing login and non-login.
Also something to do with the - being an argument to the bash process or
something like this.
man bash would give you a definite answer.
rds,
> -Original Message-
> From: users-
Thank you, Jeff.
I just commented the stty line out and it doesn't seem to have
any ill effect with interactive shells. I guess my
stty erase ^\?
was superfluous to begin with. I have hard time remembering
which rc file invokes/chains what other rc file.
Regards,
Tena Sakai
tsa...@gallo.ucsf
FWIW: you can typically put that kind of stuff in a portion of your .bashrc
that is only invoked for interactive logins. I.e., the automated ssh's that
OMPI's mpirun won't invoke those commands because they're non-interactive
logins.
I'm a tcsh user myself, so I don't know the appropriate mojo
Please see the comments inline .
When I use cmd "mpirun -host LB270210,CB060106,CB060107 -np 3 --mca btl
openib,self,sm a_user.out" or "mpirun -host LB270210,CB060106,CB060107 -np 3
--mca btl openib,self,sm --mca btl_openib_cpc_include rdmacm a_user.out", will
print correct result, but use cmd
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