Re: [OMPI users] MPI_ABORT was invoked on rank 0 in communicatorMPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread kishore kumar
Many many thanks. Best, Kishore Kumar Pusukuri http://www.cs.ucr.edu/~kishore On 28 April 2010 18:00, Martin Siegert wrote: > Yes, I am quite sure that you need at least 16GB to run SPEC MPIM2007. > See the FAQ at http://www.spec.org/mpi2007/docs/faq.html#MemoryMedium > Furthermore, the bench

Re: [OMPI users] MPI_ABORT was invoked on rank 0 in communicatorMPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread Martin Siegert
Yes, I am quite sure that you need at least 16GB to run SPEC MPIM2007. See the FAQ at http://www.spec.org/mpi2007/docs/faq.html#MemoryMedium Furthermore, the benchmark is designed to run on at least 16p. Cheers, Martin -- Martin Siegert Head, Research Computing WestGrid Site Lead IT Services

Re: [OMPI users] MPI_ABORT was invoked on rank 0 in communicatorMPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread kishore kumar
Oh. Thank you for the information. The machine has 6GM of RAM and I am creating 4 processes (for 4 cores). Are you sure that it is because of lack of resources or some problem with the network settings (I want to run the programs only on my server)? Is there anyway to do this (I need to run o

Re: [OMPI users] MPI_ABORT was invoked on rank 0 in communicatorMPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread Martin Siegert
How much memory is available on that quad core machine? The minimum requirements for MPIM2007 are: 16GB of memory for the whole system or 1GB of memory per rank, whichever is larger. For MPIL2007 you need to use at least 64 processes and a minimum of 128GB (2GB/process) is required. Cheers, Martin

Re: [OMPI users] open-mpi behaviour on Fedora, Ubuntu, Debian and CentOS

2010-04-28 Thread Asad Ali
Hi Gus, Thanks for your well researched and thoughtful reply. It will take a bit of time to absorb such a big and energetic doze. :) I took your earlier advice regarding the optimization flags causing errors in your case. You wrote in reply to Dave "The optimization flags were the main cause of c

Re: [OMPI users] open-mpi behaviour on Fedora, Ubuntu, Debian and CentOS

2010-04-28 Thread Dave Love
Fabian Hänsel writes: > You could try to set optimizations more fine-grained. Every > -Osomething stands for a certain set of optimizations. Start with > e.g. "gcc -Q -O2 --help=optimizers" to see all available optimizations > and which are enabled at -O2. Read about them on the gcc > manpage. Di

Re: [OMPI users] open-mpi behaviour on Fedora, Ubuntu, Debian and CentOS

2010-04-28 Thread Douglas Guptill
Hello Gus: Thannk you for your excellent and well-considered thoughts on the subject. You educate us all. Douglas. On Wed, Apr 28, 2010 at 02:39:20PM -0400, Gus Correa wrote: > Hi Asad > > I think the speed vs. accuracy tradeoff will always be there. > Getting both at the same time is kind of a

Re: [OMPI users] open-mpi behaviour on Fedora, Ubuntu, Debian and CentOS

2010-04-28 Thread Gus Correa
Hi Asad I think the speed vs. accuracy tradeoff will always be there. Getting both at the same time is kind of a holy grail, everybody wants it! Whoever asked you to get both gotta be kidding. Somebody already suggested enforcing IEEE floating point standard, if you want numerical accuracy and p

Re: [OMPI users] [OMP users]: OpenMP1.4 tuning for sending large messages

2010-04-28 Thread Pooja Varshneya
Hi Timur, Thanks for your response !! I have applied this patch. But i am on homogeneous environment. The patch did not help :( Thanks, Pooja On Apr 27, 2010, at 7:29 AM, Timur Magomedov wrote: Hello, Are you using heterogeneous environment? There was a similar issue recently with segfault

Re: [OMPI users] MPI_ABORT was invoked on rank 0 in communicatorMPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread kishore kumar
Getting the following error if I remove --mca btl tcp,self option from the mpirun kishore@cache-aware[23]; mpirun -np 2 su3imp_base.solaris -- [[16283,1],0]: A high-performance Open MPI point-to-point messaging module was una

Re: [OMPI users] open-mpi behaviour on Fedora, Ubuntu, Debian and CentOS

2010-04-28 Thread Tim Prince
On 4/27/2010 11:55 PM, Fabian Hänsel wrote: Hi Ali, I have solved that problem. I just removed the gcc flag -O3 from my compile script and the error vanished. However the speed of my code is also reduced to 50 iterations/minute from 70 iterations/minute, still not bad. Is there any alternat

Re: [OMPI users] MPI_ABORT was invoked on rank 0 in communicatorMPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread Jeff Squyres (jsquyres)
I don't know much about specmpi, but it seems like it is choosing to abort. Maybe the "no room for lattice" has some meaning...? -jms Sent from my PDA. No type good. From: users-boun...@open-mpi.org To: us...@open-mpi.org Sent: Wed Apr 28 01:47:01 2010 Sub

Re: [OMPI users] MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread Terry Dontje
Does the "NODE 0: no room for lattice" message have any significance? Could it be that for whatever reason the application is running out of memory? --td kishore kumar wrote: Hi, I am trying to run SPEC MPI 2007 workload on a quad-core machine. However getting this error message. I also tri

Re: [OMPI users] mpirun works locally but not through network

2010-04-28 Thread Jeff Squyres (jsquyres)
So processes are running - good. The hang might then be occurring in the tcp wireup of mpi communications (ompi only lazily creates connections between processes). What is the tcp setup between the two machines? (Ipaddr, netmask, etc.) Do you have any firewall software running? -jms Sent fr

Re: [OMPI users] mpirun works locally but not through network

2010-04-28 Thread Nguyen Kim Son
Thanks for your suggestion ! "$ mpirun --host localhost,name_of_distant_machine hostname" works. In fact, the simple programs that prints " I am process # " always works. Problem arises only if there is communication between process which are lying on two different computers. I don't think it is

Re: [OMPI users] open-mpi behaviour on Fedora, Ubuntu, Debian and CentOS

2010-04-28 Thread Fabian Hänsel
Hi Ali, I have solved that problem. I just removed the gcc flag -O3 from my compile script and the error vanished. However the speed of my code is also reduced to 50 iterations/minute from 70 iterations/minute, still not bad. Is there any alternative to -O3 flag? I tried -O2 too but this al

[OMPI users] MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 0.

2010-04-28 Thread kishore kumar
Hi, I am trying to run SPEC MPI 2007 workload on a quad-core machine. However getting this error message. I also tried to use hostfile option by specifying localhost slots=4, but still getting the following error. Please help me. $mpirun --mca btl tcp,sm,self -np 4 su3imp_base.solaris SU3 with im

Re: [OMPI users] open-mpi behaviour on Fedora, Ubuntu, Debian and CentOS

2010-04-28 Thread Asad Ali
Hi all, Many many thanks to all of you for your time, sincere help, useful tips and advices. I have solved that problem. I just removed the gcc flag -O3 from my compile script and the error vanished. However the speed of my code is also reduced to 50 iterations/minute from 70 iterations/minute, st