Re: [OMPI users] Open MPI performance on Amazon Cloud

2010-03-12 Thread amjad ali
Dear Hammad, Can you please have a RUN with "sufficiently Larger Problem Instance"? Then see what happens!! Sufficientmay be 10 times greater than that you used. best regards, Amjad Ali. On Fri, Mar 12, 2010 at 3:10 AM, Hammad Siddiqi wrote: > Dear All, > Is this the correct forum for sendi

Re: [OMPI users] Problem in using openmpi

2010-03-12 Thread Samuel K. Gutierrez
Hi, If lib64 isn't there, try lib. That is, export LD_LIBRARY_PATH=/home/jess/local/ompi/lib Referencing the example that I provided earlier. -- Samuel K. Gutierrez Los Alamos National Laboratory On Mar 12, 2010, at 3:31 PM, vaibhav dutt wrote: Hi, I used the export command but it doe

Re: [OMPI users] Problem in using openmpi

2010-03-12 Thread Fabian Hänsel
Hej vaibhav! Assuming you use the official Ubuntu packages: > mpicc: error while loading shared libraries: libopen-pal.so.0: cannot > open shared object file: No such file or dir The library should exist under /usr/lib/libopen-pal.so.0 (which symlinks to /usr/lib/libopen-pal.so.0.0.0 which symli

Re: [OMPI users] Problem in using openmpi

2010-03-12 Thread vaibhav dutt
Hi, I used the export command but it does not seem to work.It's still giving the same error as the lib64 directory does not exist in the ompi folder. Any Suggestions. Thank You, Vaibhav On Fri, Mar 12, 2010 at 3:05 PM, Fernando Lemos wrote: > On Fri, Mar 12, 2010 at 6:02 PM, Samuel K. Gutier

[OMPI users] openib BTL and MPI_THREAD_MULTIPLE

2010-03-12 Thread Nick Edmonds
Currently the openib BTL silently refuses to run when MPI_THREAD_MULTIPLE is specified (ompi/mca/btl/openib/btl_openib_component.c:2367 in the current trunk, r22822) which leads to confusing (to some people) error messages such as: PML add procs failed --> Returned "Unreachable" (-12) instead o

Re: [OMPI users] 3D domain decomposition with MPI

2010-03-12 Thread Prentice Bisbal
Gus Correa wrote: > At each time step you exchange halo/ghost sections across > neighbor subdomains, using MPI_Send/MPI_Recv, > or MPI_SendRecv. > Even better if you use non-blocking calls > MPI_ISend/MPI_[I]Recv/MPI_Wait[all]. > Read about the advantages of non-blocking communication > in the "M

Re: [OMPI users] Problem in using openmpi

2010-03-12 Thread Fernando Lemos
On Fri, Mar 12, 2010 at 6:02 PM, Samuel K. Gutierrez wrote: > One more thing.  The line should have been: > > export LD_LIBRARY_PATH=/home/jess/local/ompi/lib64 > > The space in the previous email will make bash unhappy 8-|. > > -- > Samuel K. Gutierrez > Los Alamos National Laboratory > > On Mar

Re: [OMPI users] Problem in using openmpi

2010-03-12 Thread Samuel K. Gutierrez
One more thing. The line should have been: export LD_LIBRARY_PATH=/home/jess/local/ompi/lib64 The space in the previous email will make bash unhappy 8-|. -- Samuel K. Gutierrez Los Alamos National Laboratory On Mar 12, 2010, at 1:56 PM, Samuel K. Gutierrez wrote: Hi, It sounds like you may

Re: [OMPI users] Problem in using openmpi

2010-03-12 Thread Samuel K. Gutierrez
Hi, It sounds like you may need to set your LD_LIBRARY_PATH environment variable correctly. There are several ways that you can tell the dynamic linker where the required libraries are located, but the following may be sufficient for your needs. Let's say, for example, that your Open MPI

[OMPI users] Problem in using openmpi

2010-03-12 Thread vaibhav dutt
Hi, I have installed openmpi on an Kubuntu , with Dual core Linux AMD Athlon When trying to compile a simple program, I am getting an error. mpicc: error while loading shared libraries: libopen-pal.so.0: cannot open shared object file: No such file or dir I read somewhere that this error is beca

Re: [OMPI users] 3D domain decomposition with MPI

2010-03-12 Thread Gus Correa
Hi Cole, Jed I don't have much direct experience with PETSc. I mostly troubleshooted other people's PETSc programs, and observed their performance. What I noticed is: 1) PETSc's learning curve is as steep if not steeper than MPI, and 2) PETSc codes seem to be slower (or have more overhead) than c

Re: [OMPI users] 3D domain decomposition with MPI

2010-03-12 Thread Cole, Derek E
I actually am only working on this code because it is what someone wants. I would have probably chosen a different solver as well. We do have some vector machines though that this will probably run on. I did a lot of memory work already in the serial code to speed it up pretty significantly.

Re: [OMPI users] Open MPI performance on Amazon Cloud

2010-03-12 Thread Hammad Siddiqi
Dear All, Is this the correct forum for sending these kind of emails. please let me know if there is some other mailing list. Thank Best Regards, Hammad Siddiqi System Administrator, Centre for High Performance Scientific Computing, School of Electrical Engineering and Computer Science, National Un