Re: [OMPI users] How do you get static linkage for Intel compiler libsfor the orterun executable?

2009-11-11 Thread Martin Siegert
On Wed, Nov 11, 2009 at 07:49:25AM -0700, Blosch, Edwin L wrote: > Thanks for the reply, Jeff, > > I think -i-static is an Intel 9 option, but unfortunately it didn't make a > difference switching to -static-intel: > > > libtool: link: /appserv/intel/cce/10.1.021/bin/icc -DNDEBUG > -finline-fu

Re: [OMPI users] MPI Derived datatype + Persistent communication

2009-11-11 Thread Eugene Loh
amjad ali wrote: Hi all, I read that MPI Derived datatypes may provide efficient way to send data non-contiguous in the memory. MPI Persistent communication may provide efficient way in case some specified/fix communication is performed in an iterative code. Can we combine both together to

Re: [OMPI users] checkpoint opempi-1.3.3+sge62

2009-11-11 Thread Josh Hursey
On Nov 9, 2009, at 5:33 AM, Sergio Díaz wrote: > Hi Josh, > > The OpenMPI version is 1.3.3. > > The command ompi-ps doesn't work. > > [root@compute-3-18 ~]# ompi-ps -j 2726959 -p 16241 > [root@compute-3-18 ~]# ompi-ps -v -j 2726959 -p 16241 > [compute-3-18.local:16254] orte_ps: Acquiring list

[OMPI users] MPI Derived datatype + Persistent communication

2009-11-11 Thread amjad ali
Hi all, I read that MPI Derived datatypes may provide efficient way to send data non-contiguous in the memory. MPI Persistent communication may provide efficient way in case some specified/fix communication is performed in an iterative code. Can we combine both together to get some enhanced bene

Re: [OMPI users] mpirun noticed that process rank 1 ... exited on signal 13 (Broken pipe).

2009-11-11 Thread Josh Hursey
On Nov 6, 2009, at 7:59 AM, Kritiraj Sajadah wrote: > Hi Everyone, > I have install openmpi 1.3 and blcr 0.81 on my laptop (single > processor). > > I am trying to checkpoint a small test application: > > ### > > #include > #include > #include > #include > #include >

Re: [OMPI users] Problem with mpirun -preload-binary option

2009-11-11 Thread Josh Hursey
Though the --preload-binary option was created while building the checkpoint/restart functionality it does not depend on checkpoint/restart function in any way (just a side effect of the initial development). The problem you are seeing is a result of the computing environment setup of password-

Re: [OMPI users] Problem with mpirun -preload-binary option

2009-11-11 Thread Ralph Castain
I'm no expert on the preload-binary option - but I would suspect that is the case given your observations. That option was created to support checkpoint/restart, not for what you are attempting to do. Like I said, you -should- be able to use it for that purpose, but I expect you may hit a f

Re: [OMPI users] Problem with mpirun -preload-binary option

2009-11-11 Thread Qing Pang
Thank you very much for your help! I believe I do have password-less ssh set up, at least from master node to client node (desktop -> laptop in my case). If I type >ssh node1 on my desktop terminal, I am able to get to the laptop node without being asked for password. And as I mentioned, if I c

Re: [OMPI users] How do you get static linkage for Intel compiler libsfor the orterun executable?

2009-11-11 Thread Blosch, Edwin L
Thanks for the reply, Jeff, I think -i-static is an Intel 9 option, but unfortunately it didn't make a difference switching to -static-intel: libtool: link: /appserv/intel/cce/10.1.021/bin/icc -DNDEBUG -finline-functions -fno-strict-aliasing -restrict -pthread -fvisibility=hidden -g -static-in

Re: [OMPI users] System hang-up on MPI_Reduce

2009-11-11 Thread Ralph Castain
You are welcome to stick barriers in - doesn't hurt anything other than performance. On Nov 11, 2009, at 3:00 AM, Glembek Ondřej wrote: Thanx for your reply... My coll_sync_priority is set to 50. See the dump of ompi_info -- param coll sync below... Does sticking barriers hurt anything or

Re: [OMPI users] users Digest, Vol 1401, Issue 2

2009-11-11 Thread Yogesh Aher
Yes.. The executables run initially and then gives the mentioned error in the first message! i.e. ./mpirun -hostfile machines executable -- MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD with errorcode 1. NOTE

Re: [OMPI users] System hang-up on MPI_Reduce

2009-11-11 Thread Glembek Ondřej
Thanx for your reply... My coll_sync_priority is set to 50. See the dump of ompi_info --param coll sync below... Does sticking barriers hurt anything or is it just a cosmetic thing??? I'm fine with this solution... Thanx Ondrej $ompi_info --param coll sync MCA coll: para

Re: [OMPI users] ipo: warning #11009: file format notrecognized for /Libraries_intel/openmpi/lib/libmpi.so

2009-11-11 Thread vasilis gkanis
On Tuesday 10 November 2009 07:35:49 pm Nifty Tom Mitchell wrote: > On Tue, Nov 10, 2009 at 03:44:59PM +0200, vasilis gkanis wrote: > > I am trying to compile openmpi-1.3.3 with intel Fortran and gcc compiler. > > > > In order to compile openmpi I run configure with the following options: > > > > .