[OMPI users] Problems with "error polling LP CQ with status RNR"

2009-05-13 Thread Åke Sandgren
Hi! I'm having problem with getting the "error polling LP CQ with status RNR..." on an otherwise completely empty system. There are no errors visible in the error counters in any of the HCAs or switches or anywhere else. I'm running OMPI 1.3.2 built with pathscale 3.2 If i add -mca btl 'ofud,sel

Re: [OMPI users] How to override MPI functions such as MPI_Init, MPI_Recv...

2009-05-13 Thread Jeff Squyres
On May 13, 2009, at 2:33 PM, Le Duy Khanh wrote: Wow, that's great. You mean that PMPI_* is totally/functionally similar to MPI_*, right ? They are actually aliases of each other in Open MPI. See the profiling chapter in the MPI spec; it's intended that you can intercept the MPI_* cal

Re: [OMPI users] How to override MPI functions such as MPI_Init, MPI_Recv...

2009-05-13 Thread Le Duy Khanh
Wow, that's great.  You mean that PMPI_* is totally/functionally similar to MPI_*, right ?  Thank you so much for your instructions. Le , Duy Khanh Cellphone: (+84)958521704 Faculty of Computer Science and Engineering Ho Chi Minh city University of Technology , Viet Nam --- On Wed, 5/13/09, J

Re: [OMPI users] How to override MPI functions such as MPI_Init, MPI_Recv...

2009-05-13 Thread Jeff Squyres
You could just define your own library with the same signatures as official MPI functions, and link that into MPI applications. Under the covers, you invoke the PMPI_* equivalents of each function. Lots of profiling and analysis tools work this way. For example: int MPI_Init(int argc, ch

Re: [OMPI users] How to override MPI functions such as MPI_Init, MPI_Recv...

2009-05-13 Thread Durga Choudhury
You could use a separate namespace (if you are using C++) and define your functions there... Durga On Wed, May 13, 2009 at 1:20 PM, Le Duy Khanh wrote: > Dear, > >  I intend to override some MPI functions such as MPI_Init, MPI_Recv... but I > don't want to dig into OpenMPI source code.Therefore,

[OMPI users] How to override MPI functions such as MPI_Init, MPI_Recv...

2009-05-13 Thread Le Duy Khanh
Dear,  I intend to override some MPI functions such as MPI_Init, MPI_Recv... but I don't want to dig into OpenMPI source code.Therefore, I am thinking of a way to create a lib called "mympi.h" in which I will #include "mpi.h" to override those functions. I will create a new interface with exact

Re: [OMPI users] [Fwd: mpi alltoall memory requirement]

2009-05-13 Thread Ashley Pittman
On Thu, 2009-04-23 at 07:12 +, viral@gmail.com wrote: > Hi > Thanks for your response. > However, I am running > mpiexec -ppn 24 -n 192 /opt/IMB-MPI1 alltaoll -msglen /root/temp > > And file /root/temp contains entry upto 65535 size only. That means > alltoall test will run upto 6

Re: [OMPI users] ****---How to configure NIS and MPI on spreadNICs?----****

2009-05-13 Thread Jeff Squyres
On May 12, 2009, at 11:44 PM, shan axida wrote: I want to configure NIS and MPI with different network. For example, NIS uses eth0 and MPI uses eth1 some thing like that. I don't have any information about NIS, but you can see these 2 FAQ items that discuss how to set which IP networks OMPI

[OMPI users] OpenMPI deadlocks and race conditions ?

2009-05-13 Thread François PELLEGRINI
Hello all, I sometimes run into deadlocks in OpenMPI (1.3.3a1r21206), when running my MPI+threaded PT-Scotch software. Luckily, the case is very small, with 4 procs only, so I have been able to investigate it a bit. It seems that matches between commnications are not done properly on cloned commu